ColabAlign/associated-references.bib at main · crfield18/ColabAlign · GitHub

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@article{Biopython,
   author = {Cock, P. J. and Antao, T. and Chang, J. T. and Chapman, B. A. and Cox, C. J. and Dalke, A. and Friedberg, I. and Hamelryck, T. and Kauff, F. and Wilczynski, B. and de Hoon, M. J.},
   title = {Biopython: freely available Python tools for computational molecular biology and bioinformatics},
   journal = {Bioinformatics},
   volume = {25},
   number = {11},
   pages = {1422-3},
   ISSN = {1367-4811 (Electronic) 1367-4803 (Print) 1367-4803 (Linking)},
   DOI = {10.1093/bioinformatics/btp163},
   url = {https://www.ncbi.nlm.nih.gov/pubmed/19304878},
   year = {2009},
   type = {Journal Article}
}

@article{TreeCluster,
   author = {Balaban, M. and Moshiri, N. and Mai, U. and Jia, X. and Mirarab, S.},
   title = {TreeCluster: Clustering biological sequences using phylogenetic trees},
   journal = {PLoS One},
   volume = {14},
   number = {8},
   pages = {e0221068},
   ISSN = {1932-6203 (Electronic) 1932-6203 (Linking)},
   DOI = {10.1371/journal.pone.0221068},
   url = {https://www.ncbi.nlm.nih.gov/pubmed/31437182},
   year = {2019},
   type = {Journal Article}
}

@article{MUSTANG,
   author = {Konagurthu, A. S. and Whisstock, J. C. and Stuckey, P. J. and Lesk, A. M.},
   title = {MUSTANG: a multiple structural alignment algorithm},
   journal = {Proteins},
   volume = {64},
   number = {3},
   pages = {559-74},
   ISSN = {1097-0134 (Electronic) 0887-3585 (Linking)},
   DOI = {10.1002/prot.20921},
   url = {https://www.ncbi.nlm.nih.gov/pubmed/16736488},
   year = {2006},
   type = {Journal Article}
}

@article{MView,
   author = {Brown, N. P. and Leroy, C. and Sander, C.},
   title = {MView: a web-compatible database search or multiple alignment viewer},
   journal = {Bioinformatics},
   volume = {14},
   number = {4},
   pages = {380-1},
   ISSN = {1367-4803 (Print) 1367-4803 (Linking)},
   DOI = {10.1093/bioinformatics/14.4.380},
   url = {https://www.ncbi.nlm.nih.gov/pubmed/9632837},
   year = {1998},
   type = {Journal Article}
}

@article{US-align,
   author = {Zhang, C. and Shine, M. and Pyle, A. M. and Zhang, Y.},
   title = {US-align: universal structure alignments of proteins, nucleic acids, and macromolecular complexes},
   journal = {Nat Methods},
   volume = {19},
   number = {9},
   pages = {1109-1115},
   ISSN = {1548-7105 (Electronic) 1548-7091 (Linking)},
   DOI = {10.1038/s41592-022-01585-1},
   url = {https://www.ncbi.nlm.nih.gov/pubmed/36038728},
   year = {2022},
   type = {Journal Article}
}

@article{BeEM,
   author = {Zhang, C.},
   title = {BeEM: fast and faithful conversion of mmCIF format structure files to PDB format},
   journal = {BMC Bioinformatics},
   volume = {24},
   number = {1},
   pages = {260},
   ISSN = {1471-2105 (Electronic) 1471-2105 (Linking)},
   DOI = {10.1186/s12859-023-05388-9},
   url = {https://www.ncbi.nlm.nih.gov/pubmed/37340457},
   year = {2023},
   type = {Journal Article}
}