Fix flag for install from file for docs requirements and add missing file

Use scripts for conda recipe for python wrapper

Author: langmm

.github/workflows/test-suite.yml

@@ -389,7 +389,7 @@ jobs:
           conda-remove-defaults: true
       - name: Install doc dependencies
         run: |
-          conda install -f environment_docs.yml
+          conda install --file environment_docs.yml
       - name: Build docs
         if: matrix.os != 'windows-latest'
         run: |

CMakeLists.txt

@@ -82,6 +82,7 @@ message(STATUS "CONDA_PREFIX = ${CONDA_PREFIX}")
 
 set(CMAKE_MODULE_PATH "${CMAKE_MODULE_PATH};${PROJECT_SOURCE_DIR}/cmake")
 
+option(BUILD_CXX "Build CXX library & executable." ON)
 option(BUILD_TESTS "Build ePhotosynthesis tests.")
 option(TEST_COVERAGE "Include test coverage in the tests (turns BUILD_TESTS ON)")
 option(PRESERVE_TEST_OUTPUT "Don't clean up test output after the test runs")
@@ -93,6 +94,14 @@ option(EPHOTO_USE_SCOPED_ENUM "Build using a scoped enumerator for the ValueSet
 option(MAKE_EQUIVALENT_TO_MATLAB "Build with settings that make this model equivalent to the Matlab C3 model")
 option(WITH_YGGDRASIL "Compile with yggdrasil enabled")
 
+if(SKBUILD)
+    set(BUILD_CXX OFF)
+    set(BUILD_PYTHON ON)
+    set(BUILD_TESTS OFF)
+    set(BUILD_DOCS OFF)
+    set(WITH_YGGDRASIL ON)
+endif()
+
 if(NOT BUILD_PYTHON)
     set(BUILD_PYTHON OFF)
 else()

environment_docs.yml

@@ -0,0 +1,6 @@
+channels:
+  - conda-forge
+dependencies:
+  - setuptools_scm
+  - doxygen>=1.9.2
+  - graphviz

recipe/bld_cpp.bat

@@ -8,7 +8,8 @@ cd conda_build
 cmake -GNinja ^
       -D CMAKE_BUILD_TYPE=%CONFIGURATION% ^
       -D CMAKE_INSTALL_PREFIX=%LIBRARY_PREFIX% ^
-      -D CMAKE_VERBOSE_MAKEFILE:BOOL=ON ..
+      -D CMAKE_VERBOSE_MAKEFILE:BOOL=ON ^
+      -D WITH_YGGDRASIL:BOOL=ON ..
 if errorlevel 1 exit 1
 
 :: Using ninja

recipe/bld_python.bat

@@ -0,0 +1,29 @@
+@setlocal
+
+"%PYTHON%" -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv
+
+rem set CONFIGURATION=Release
+
+rem mkdir conda_build
+rem cd conda_build
+
+rem :: Call cmake
+rem cmake -GNinja ^
+rem       -D CMAKE_BUILD_TYPE=%CONFIGURATION% ^
+rem       -D CMAKE_INSTALL_PREFIX=%LIBRARY_PREFIX% ^
+rem       -D CMAKE_VERBOSE_MAKEFILE:BOOL=ON ^
+rem       -D BUILD_CXX:BOOL=OFF ^
+rem       -D BUILD_PYTHON:BOOL=ON ^
+rem       -D WITH_YGGDRASIL:BOOL=ON ..
+rem if errorlevel 1 exit 1
+
+rem :: Using ninja
+rem ninja all
+rem ninja install
+
+rem :: Run tests
+rem if errorlevel 1 exit 1
+rem ctest -C "%Configuration%" -V
+rem if errorlevel 1 exit 1
+
+@endlocal

recipe/build_cpp.sh

@@ -4,7 +4,11 @@ set -euo pipefail
 # Using cmake
 mkdir conda_build
 cd conda_build
-cmake -D CMAKE_BUILD_TYPE=Release -D CMAKE_INSTALL_PREFIX=$PREFIX -D CMAKE_VERBOSE_MAKEFILE:BOOL=ON ..
+cmake ${CMAKE_ARGS} \
+    -D CMAKE_BUILD_TYPE=Release \
+    -D CMAKE_INSTALL_PREFIX=$PREFIX \
+    -D CMAKE_VERBOSE_MAKEFILE:BOOL=ON \
+    -D WITH_YGGDRASIL:BOOL=ON ..
 
 # Build all, run tests, then install
 cmake --build . --config Release

recipe/build_python.sh

@@ -0,0 +1,20 @@
+#!/bin/sh
+set -euo pipefail
+
+"${PYTHON}" -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv
+
+# # Using cmake
+# mkdir conda_build
+# cd conda_build
+# cmake ${CMAKE_ARGS} \
+#       -D CMAKE_BUILD_TYPE=Release \
+#       -D CMAKE_INSTALL_PREFIX=$PREFIX \
+#       -D CMAKE_VERBOSE_MAKEFILE:BOOL=ON \
+#       -D BUILD_CXX:BOOL=OFF \
+#       -D BUILD_PYTHON:BOOL=ON \
+#       -D WITH_YGGDRASIL:BOOL=ON ..
+
+# # Build all, run tests, then install
+# cmake --build . --config Release
+# ctest -V
+# cmake --install .

recipe/meta.yaml

@@ -56,7 +56,9 @@ outputs:
         - if not exist %LIBRARY_BIN%\\ePhoto.exe exit 1  # [win]
   - name: pyphotosynthesis
     version: {{ version }}
-    script: python -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv 
+    script: build_python.sh  # [unix]
+    script: bld_python.bat  # [win]
+    # script: python -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv 
     about:
       summary:
       description: |