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Add timeout limit to test steps #20

Add timeout limit to test steps

Add timeout limit to test steps #20

Triggered via push November 20, 2025 17:53
Status Failure
Total duration 7m 8s
Artifacts
Prepare test parameters
2s
Prepare test parameters
Matrix: run_tests
All tests passed
2s
All tests passed
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17 errors and 44 warnings
run_tests (macos, 3.11, conda, false, false, false, false)
The process '/Users/runner/miniconda3/condabin/mamba' failed with exit code 1
run_tests (macos, 3.11, pip, false, false, false, false)
Process completed with exit code 1.
run_tests (windows, 3.11, pip, false, false, false, false)
Process completed with exit code 1.
run_tests (ubuntu, 3.11, pip, false, false, false, false)
Process completed with exit code 1.
run_tests (windows, 3.11, conda, false, false, false, false)
The process 'C:\Users\runneradmin\miniconda3\condabin\mamba.bat' failed with exit code 1
run_tests (ubuntu, 3.11, pip, true, false, false, false)
Process completed with exit code 1.
run_tests (ubuntu, 3.13, conda, true)
The process '/home/runner/miniconda3/condabin/mamba' failed with exit code 1
run_tests (ubuntu, 3.11, conda, true, false, false, false)
The process '/home/runner/miniconda3/condabin/mamba' failed with exit code 1
run_tests (ubuntu, 3.9, conda, true)
The process '/home/runner/miniconda3/condabin/mamba' failed with exit code 1
run_tests (macos, 3.11, conda, true, false, false, false)
The process '/Users/runner/miniconda3/condabin/mamba' failed with exit code 1
run_tests (windows, 3.11, conda, true, false, false, false)
The process 'C:\Users\runneradmin\miniconda3\condabin\mamba.bat' failed with exit code 1
run_tests (ubuntu, 3.12, conda, true)
The process '/home/runner/miniconda3/condabin/mamba' failed with exit code 1
run_tests (ubuntu, 3.11, conda, false, false, false, false)
The process '/home/runner/miniconda3/condabin/mamba' failed with exit code 1
run_tests (macos, 3.11, pip, true, false, false, false)
Process completed with exit code 1.
run_tests (ubuntu, 3.10, conda, true)
The process '/home/runner/miniconda3/condabin/mamba' failed with exit code 1
run_tests (windows, 3.11, pip, true, false, false, false)
Process completed with exit code 1.
All tests passed
Process completed with exit code 1.
run_tests (macos, 3.11, conda, false, false, false, false)
critical libmamba Could not solve for environment specs
run_tests (macos, 3.11, conda, false, false, false, false)
error libmamba Could not solve for environment specs The following packages are incompatible ├─ boost ==1.66.0 * does not exist (perhaps a typo or a missing channel); └─ lpy =* * does not exist (perhaps a typo or a missing channel).
run_tests (macos, 3.11, conda, false, false, false, false)
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
run_tests (macos, 3.11, conda, false, false, false, false)
CondaKeyError: 'channels': value 'defaults' not present in config
run_tests (macos, 3.11, pip, false, false, false, false)
No available formula with the name "pandoc-citeproc". Did you mean pandoc-plot?
run_tests (windows, 3.11, conda, false, false, false, false)
critical libmamba Could not solve for environment specs
run_tests (windows, 3.11, conda, false, false, false, false)
error libmamba Could not solve for environment specs The following packages are incompatible ├─ boost ==1.66.0 * is not installable because there are no viable options │ ├─ boost 1.66.0 would require │ │ └─ vc ==9 *, which does not exist (perhaps a missing channel); │ └─ boost 1.66.0 would require │ └─ vc ==14 *, which does not exist (perhaps a missing channel); └─ lpy =* * does not exist (perhaps a typo or a missing channel).
run_tests (windows, 3.11, conda, false, false, false, false)
EnvironmentNameNotFound: Could not find conda environment: yggdrasil You can list all discoverable environments with `conda info --envs`.
run_tests (windows, 3.11, conda, false, false, false, false)
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
run_tests (windows, 3.11, conda, false, false, false, false)
CondaKeyError: 'channels': value 'defaults' not present in config
run_tests (ubuntu, 3.13, conda, true)
critical libmamba Could not solve for environment specs
run_tests (ubuntu, 3.13, conda, true)
error libmamba Could not solve for environment specs The following packages are incompatible ├─ biopython =* * is installable with the potential options │ ├─ biopython [1.70|1.71|...|1.76] would require │ │ └─ python_abi =* *_cp27mu, which can be installed; │ ├─ biopython [1.79|1.80|...|1.86] would require │ │ └─ python_abi =3.10 *_cp310, which conflicts with any installable versions previously reported; │ ├─ biopython [1.79|1.80|...|1.86] would require │ │ └─ python_abi =3.11 *_cp311, which conflicts with any installable versions previously reported; │ ├─ biopython [1.77|1.78|...|1.83] would require │ │ └─ python_abi =3.8 *_cp38, which conflicts with any installable versions previously reported; │ ├─ biopython [1.79|1.80|1.81] would require │ │ └─ python_abi ==3.8 *_pypy38_pp73, which conflicts with any installable versions previously reported; │ ├─ biopython [1.79|1.80|...|1.84] would require │ │ └─ python_abi ==3.9 *_pypy39_pp73, which conflicts with any installable versions previously reported; │ ├─ biopython [1.78|1.79|...|1.85] would require │ │ └─ python_abi =3.9 *_cp39, which conflicts with any installable versions previously reported; │ ├─ biopython [1.81|1.82|...|1.86] would require │ │ └─ python_abi =3.12 *_cp312, which conflicts with any installable versions previously reported; │ ├─ biopython [1.85|1.86] would require │ │ └─ python_abi =3.13 *_cp313, which conflicts with any installable versions previously reported; │ ├─ biopython [1.85|1.86] would require │ │ └─ python_abi =3.14 *_cp314, which conflicts with any installable versions previously reported; │ ├─ biopython [1.70|1.71|1.72] would require │ │ └─ python_abi =* *_cp35m, which can be installed; │ ├─ biopython [1.70|1.71|...|1.76] would require │ │ └─ python_abi =* *_cp36m, which can be installed; │ ├─ biopython [1.72|1.73|1.74|1.75|1.76] would require │ │ └─ python_abi =* *_cp37m, which can be installed; │ ├─ biopython [1.74|1.75|1.76] would require │ │ └─ python_abi =* *_cp38, which can be installed; │ ├─ biopython [1.77|1.78|1.79] would require │ │ └─ python_abi =3.6 *_cp36m, which conflicts with any installable versions previously reported; │ ├─ biopython [1.77|1.78] would require │ │ └─ python_abi ==3.6 *_pypy36_pp73, which conflicts with any installable versions previously reported; │ ├─ biopython [1.77|1.78|1.79] would require │ │ └─ python_abi =3.7 *_cp37m, which conflicts with any installable versions previously reported; │ ├─ biopython [1.78|1.79] would require │ │ └─ pypy3.6 >=7.3.3 *, which requires │ │ └─ python =3.6 *_73_pypy, which can be installed; │ └─ biopython [1.78|1.79] would require │ └─ python_abi ==3.7 *_pypy37_pp73, which conflicts with any installable versions previously reported; ├─ boost ==1.66.0 * is installable with the potential options │ ├─ boost 1.66.0 would require │ │ └─ python_abi =* *_cp27mu, which can be installed; │ ├─ boost 1.66.0 would require │ │ └─ python_abi =* *_cp35m, which can be installed; │ └─ boost 1.66.0 would require │ └─ python_abi =* *_cp36m, which can be installed; ├─ lpy =* * does not exist (perhaps a typo or a missing channel); └─ python =3.13 * is not installable because there are no viable options ├─ python [3.13.0|3.13.1|...|3.13.9] would require │ └─ python_abi =3.13 *_cp313t, which conflicts with any installable versions previously reported; └─ python [3.13.0|3.13.1|...|3.13.9] would require └─ python_abi =3.13 *_cp313, which conflicts with any installable versions previously reported.
run_tests (ubuntu, 3.13, conda, true)
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
run_tests (ubuntu, 3.13, conda, true)
CondaKeyError: 'channels': value 'defaults' not present in config
run_tests (ubuntu, 3.11, conda, true, false, false, false)
critical libmamba Could not solve for environment specs
run_tests (ubuntu, 3.11, conda, true, false, false, false)
error libmamba Could not solve for environment specs The following packages are incompatible ├─ boost ==1.66.0 * is installable with the potential options │ ├─ boost 1.66.0 would require │ │ ├─ python =3.6 * with the potential options │ │ │ ├─ python [3.6.0|3.6.0a3|...|3.6.9], which can be installed; │ │ │ ├─ python 3.6.12 would require │ │ │ │ └─ pypy3.6 =7.3.3 *, which requires │ │ │ │ └─ python =3.6 *_73_pypy, which can be installed; │ │ │ └─ python 3.6.9 would require │ │ │ └─ python_abi ==3.6 *_pypy36_pp73, which can be installed; │ │ └─ python_abi =* *_cp36m, which conflicts with any installable versions previously reported; │ ├─ boost 1.66.0 would require │ │ └─ python =2.7 *, which can be installed; │ └─ boost 1.66.0 would require │ └─ python =3.5 *, which can be installed; ├─ lpy =* * does not exist (perhaps a typo or a missing channel); └─ python =3.11 * is not installable because it conflicts with any installable versions previously reported.
run_tests (ubuntu, 3.11, conda, true, false, false, false)
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
run_tests (ubuntu, 3.11, conda, true, false, false, false)
CondaKeyError: 'channels': value 'defaults' not present in config
run_tests (ubuntu, 3.9, conda, true)
critical libmamba Could not solve for environment specs
run_tests (ubuntu, 3.9, conda, true)
error libmamba Could not solve for environment specs The following packages are incompatible ├─ astropy =* * is installable with the potential options │ ├─ astropy [1.3|1.3.1|...|2.0.9] would require │ │ ├─ python [=2.7 *|>=2.7,<2.8.0a0 *], which can be installed; │ │ └─ python_abi =* *_cp27mu, which can be installed; │ ├─ astropy [4.3.1|5.0|...|6.1.7] would require │ │ └─ python_abi =3.10 *_cp310, which conflicts with any installable versions previously reported; │ ├─ astropy [5.0.5|5.1.1|...|6.1.7] would require │ │ └─ python_abi =3.11 *_cp311, which conflicts with any installable versions previously reported; │ ├─ astropy [4.0|4.0.1.post1|...|5.2.2] would require │ │ └─ python_abi =3.8 *_cp38, which conflicts with any installable versions previously reported; │ ├─ astropy [5.0.5|5.0.6|...|5.2.2] would require │ │ └─ python_abi ==3.8 *_pypy38_pp73, which conflicts with any installable versions previously reported; │ ├─ astropy [4.0.4|4.0.6|...|6.0.1] would require │ │ └─ python_abi =3.9 *_cp39, which conflicts with any installable versions previously reported; │ ├─ astropy [5.0.5|5.0.6|...|6.0.1] would require │ │ └─ python_abi ==3.9 *_pypy39_pp73, which conflicts with any installable versions previously reported; │ ├─ astropy [5.3.4|6.0.0|...|6.1.7] would require │ │ └─ python_abi =3.12 *_cp312, which conflicts with any installable versions previously reported; │ ├─ astropy [6.1.3|6.1.4|6.1.5|6.1.6|6.1.7] would require │ │ └─ python_abi =3.13 *_cp313, which conflicts with any installable versions previously reported; │ ├─ astropy [1.3|1.3.1|...|3.0.4] would require │ │ ├─ python [=3.5 *|>=3.5,<3.6.0a0 *], which can be installed; │ │ └─ python_abi =* *_cp35m, which can be installed; │ ├─ astropy [1.3|1.3.1|...|3.0.2] would require │ │ ├─ python =3.6 * with the potential options │ │ │ ├─ python [3.6.0|3.6.1|...|3.6.9], which can be installed; │ │ │ ├─ python [3.6.0a3|3.6.0a4|...|3.6.0rc1], which can be installed; │ │ │ ├─ python 3.6.12 would require │ │ │ │ └─ pypy3.6 =7.3.3 *, which requires │ │ │ │ └─ python =3.6 *_73_pypy, which can be installed; │ │ │ └─ python 3.6.9 would require │ │ │ └─ python_abi ==3.6 *_pypy36_pp73, which conflicts with any installable versions previously reported; │ │ └─ python_abi =* *_cp36m, which can be installed; │ ├─ astropy [2.0.10|2.0.11|...|4.0] would require │ │ ├─ python >=3.6,<3.7.0a0 * with the potential options │ │ │ ├─ python [3.6.0|3.6.1|...|3.6.9], which can be installed; │ │ │ ├─ python 3.6.12, which can be installed (as previously explained); │ │ │ └─ python 3.6.9, which cannot be installed (as previously explained); │ │ └─ python_abi =* *_cp36m, which can be installed; │ ├─ astropy [2.0.11|2.0.12|...|4.0] would require │ │ ├─ python >=3.7,<3.8.0a0 * with the potential options │ │ │ ├─ python [3.7.0|3.7.1|...|3.7.9], which can be installed; │ │ │ └─ python [3.7.10|3.7.12|3.7.9] would require │ │ │ └─ python_abi ==3.7 *_pypy37_pp73, which conflicts with any installable versions previously reported; │ │ └─ python_abi =* *_cp37m, which can be installed; │ ├─ astropy [3.2.3|4.0] would require │ │ └─ python_abi =* *_cp38, which can be installed; │ ├─ astropy [4.0|4.0.1.post1|4.0.2|4.0.3|4.1] would require │ │ └─ python_abi =3.6 *_cp36m, which conflicts with any installable versions previously reported; │ ├─ astropy [4.0|4.0.1.post1|...|4.3.post1] would require │ │ └─ python_abi =3.7 *_cp37m, which conflicts with any installable versions previously reported; │ ├─ astropy 4.0.4 would require │ │ ├─ numpy >=1.19.4,<2.0a0 * with the potential options │ │ │ ├─ numpy [1.21.3|1.21.4|...|1.26.4] would require │ │ │ │ └─ python_abi =3.10 *_cp310, which conflicts with any installable versions previously reported; │ │ │ ├─ numpy [1.23.4|1.23.5|..
run_tests (ubuntu, 3.9, conda, true)
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
run_tests (ubuntu, 3.9, conda, true)
CondaKeyError: 'channels': value 'defaults' not present in config
run_tests (macos, 3.11, conda, true, false, false, false)
critical libmamba Could not solve for environment specs
run_tests (macos, 3.11, conda, true, false, false, false)
error libmamba Could not solve for environment specs The following packages are incompatible ├─ boost ==1.66.0 * does not exist (perhaps a typo or a missing channel); └─ lpy =* * does not exist (perhaps a typo or a missing channel).
run_tests (macos, 3.11, conda, true, false, false, false)
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
run_tests (macos, 3.11, conda, true, false, false, false)
CondaKeyError: 'channels': value 'defaults' not present in config
run_tests (windows, 3.11, conda, true, false, false, false)
critical libmamba Could not solve for environment specs
run_tests (windows, 3.11, conda, true, false, false, false)
error libmamba Could not solve for environment specs The following packages are incompatible ├─ boost ==1.66.0 * is not installable because there are no viable options │ ├─ boost 1.66.0 would require │ │ └─ vc ==9 *, which does not exist (perhaps a missing channel); │ └─ boost 1.66.0 would require │ └─ vc ==14 *, which does not exist (perhaps a missing channel); └─ lpy =* * does not exist (perhaps a typo or a missing channel).
run_tests (windows, 3.11, conda, true, false, false, false)
EnvironmentNameNotFound: Could not find conda environment: yggdrasil You can list all discoverable environments with `conda info --envs`.
run_tests (windows, 3.11, conda, true, false, false, false)
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
run_tests (windows, 3.11, conda, true, false, false, false)
CondaKeyError: 'channels': value 'defaults' not present in config
run_tests (ubuntu, 3.12, conda, true)
critical libmamba Could not solve for environment specs
run_tests (ubuntu, 3.12, conda, true)
error libmamba Could not solve for environment specs The following packages are incompatible ├─ boost ==1.66.0 * is installable with the potential options │ ├─ boost 1.66.0 would require │ │ ├─ python =3.6 * with the potential options │ │ │ ├─ python [3.6.0|3.6.0a3|...|3.6.9], which can be installed; │ │ │ ├─ python 3.6.12 would require │ │ │ │ └─ pypy3.6 =7.3.3 *, which requires │ │ │ │ └─ python =3.6 *_73_pypy, which can be installed; │ │ │ └─ python 3.6.9 would require │ │ │ └─ python_abi ==3.6 *_pypy36_pp73, which can be installed; │ │ └─ python_abi =* *_cp36m, which conflicts with any installable versions previously reported; │ ├─ boost 1.66.0 would require │ │ └─ python =2.7 *, which can be installed; │ └─ boost 1.66.0 would require │ └─ python =3.5 *, which can be installed; ├─ lpy =* * does not exist (perhaps a typo or a missing channel); └─ python =3.12 * is not installable because it conflicts with any installable versions previously reported.
run_tests (ubuntu, 3.12, conda, true)
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
run_tests (ubuntu, 3.12, conda, true)
CondaKeyError: 'channels': value 'defaults' not present in config
run_tests (ubuntu, 3.11, conda, false, false, false, false)
critical libmamba Could not solve for environment specs
run_tests (ubuntu, 3.11, conda, false, false, false, false)
error libmamba Could not solve for environment specs The following packages are incompatible ├─ boost ==1.66.0 * is installable with the potential options │ ├─ boost 1.66.0 would require │ │ ├─ python =3.6 * with the potential options │ │ │ ├─ python [3.6.0|3.6.0a3|...|3.6.9], which can be installed; │ │ │ ├─ python 3.6.12 would require │ │ │ │ └─ pypy3.6 =7.3.3 *, which requires │ │ │ │ └─ python =3.6 *_73_pypy, which can be installed; │ │ │ └─ python 3.6.9 would require │ │ │ └─ python_abi ==3.6 *_pypy36_pp73, which can be installed; │ │ └─ python_abi =* *_cp36m, which conflicts with any installable versions previously reported; │ ├─ boost 1.66.0 would require │ │ └─ python =2.7 *, which can be installed; │ └─ boost 1.66.0 would require │ └─ python =3.5 *, which can be installed; ├─ lpy =* * does not exist (perhaps a typo or a missing channel); └─ python =3.11 * is not installable because it conflicts with any installable versions previously reported.
run_tests (ubuntu, 3.11, conda, false, false, false, false)
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
run_tests (ubuntu, 3.11, conda, false, false, false, false)
CondaKeyError: 'channels': value 'defaults' not present in config
run_tests (macos, 3.11, pip, true, false, false, false)
No available formula with the name "pandoc-citeproc". Did you mean pandoc-plot?
run_tests (ubuntu, 3.10, conda, true)
critical libmamba Could not solve for environment specs
run_tests (ubuntu, 3.10, conda, true)
error libmamba Could not solve for environment specs The following packages are incompatible ├─ astropy =* * is installable with the potential options │ ├─ astropy [1.3|1.3.1|...|2.0.9] would require │ │ ├─ python [=2.7 *|>=2.7,<2.8.0a0 *], which can be installed; │ │ └─ python_abi =* *_cp27mu, which can be installed; │ ├─ astropy [4.3.1|5.0|...|6.1.7] would require │ │ ├─ python >=3.10,<3.11.0a0 * but there are no viable options │ │ │ ├─ python [3.10.0|3.10.1|...|3.10.9] would require │ │ │ │ └─ python_abi =3.10 *_cp310, which can be installed; │ │ │ └─ python 3.10.8 would require │ │ │ └─ python_abi =3.10 *_graalpy230_310_native, which conflicts with any installable versions previously reported; │ │ └─ python_abi =3.10 *_cp310, which conflicts with any installable versions previously reported; │ ├─ astropy [5.0.5|5.1.1|...|6.1.7] would require │ │ ├─ python >=3.11,<3.12.0a0 *, which can be installed; │ │ └─ python_abi =3.11 *_cp311, which conflicts with any installable versions previously reported; │ ├─ astropy [4.0|4.0.1.post1|...|5.2.2] would require │ │ └─ python_abi =3.8 *_cp38, which conflicts with any installable versions previously reported; │ ├─ astropy [5.0.5|5.0.6|...|5.2.2] would require │ │ ├─ python >=3.8,<3.9.0a0 *, which can be installed; │ │ └─ python_abi ==3.8 *_pypy38_pp73, which conflicts with any installable versions previously reported; │ ├─ astropy [4.1|4.2|...|6.0.1] would require │ │ ├─ python >=3.9,<3.10.0a0 *, which can be installed; │ │ └─ python_abi =3.9 *_cp39, which conflicts with any installable versions previously reported; │ ├─ astropy [5.0.5|5.0.6|...|6.0.1] would require │ │ ├─ python >=3.9,<3.10.0a0 *, which can be installed; │ │ └─ python_abi ==3.9 *_pypy39_pp73, which conflicts with any installable versions previously reported; │ ├─ astropy [5.3.4|6.0.0|...|6.1.7] would require │ │ ├─ python >=3.12,<3.13.0a0 *, which can be installed; │ │ └─ python_abi =3.12 *_cp312, which conflicts with any installable versions previously reported; │ ├─ astropy [6.1.3|6.1.4|6.1.5|6.1.6|6.1.7] would require │ │ ├─ python [>=3.13,<3.14.0a0 *|>=3.13.0rc1,<3.14.0a0 *|>=3.13.0rc2,<3.14.0a0 *], which can be installed; │ │ └─ python_abi =3.13 *_cp313, which conflicts with any installable versions previously reported; │ ├─ astropy [1.3|1.3.1|...|3.0.4] would require │ │ ├─ python [=3.5 *|>=3.5,<3.6.0a0 *], which can be installed; │ │ └─ python_abi =* *_cp35m, which can be installed; │ ├─ astropy [1.3|1.3.1|...|3.0.2] would require │ │ ├─ python =3.6 * with the potential options │ │ │ ├─ python [3.6.0|3.6.1|...|3.6.9] conflicts with any installable versions previously reported; │ │ │ ├─ python [3.6.0a3|3.6.0a4|...|3.6.0rc1], which can be installed; │ │ │ ├─ python 3.6.12 would require │ │ │ │ └─ pypy3.6 =7.3.3 *, which requires │ │ │ │ └─ python =3.6 *_73_pypy, which conflicts with any installable versions previously reported; │ │ │ └─ python 3.6.9 would require │ │ │ └─ python_abi ==3.6 *_pypy36_pp73, which conflicts with any installable versions previously reported; │ │ └─ python_abi =* *_cp36m, which can be installed; │ ├─ astropy [2.0.10|2.0.11|...|4.0] would require │ │ ├─ python >=3.6,<3.7.0a0 * but there are no viable options │ │ │ ├─ python [3.6.0|3.6.1|...|3.6.9] conflicts with any installable versions previously reported; │ │ │ ├─ python 3.6.12, which cannot be installed (as previously explained); │ │ │ └─ python 3.6.9, which cannot be installed (as previously explained); │ │ └─ python_abi =* *_cp36m, which can be installed; │ ├─ astropy [2.0.11|2.0.12|...|4.0] would require │ │ ├─ python >=3.7,<3.8.0a0 * with the potential options │ │ │ ├─ python [3.7.0|3.7.1|...|3.7.9], which can be installed; │ │ │ └─ python [3.7.10|3.7.12|3.7.9] would require │ │ │
run_tests (ubuntu, 3.10, conda, true)
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
run_tests (ubuntu, 3.10, conda, true)
CondaKeyError: 'channels': value 'defaults' not present in config