Update submodules after clone #5
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| name: Validate registered models | |
| 'on': | |
| push: | |
| branches-ignore: | |
| - gh-pages | |
| tags: | |
| - '*' | |
| schedule: | |
| - cron: 0 10 * * 1 | |
| jobs: | |
| test: | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| yggdrasil-version: [latest, dev] | |
| fail-fast: false | |
| steps: | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: true | |
| ################################### | |
| # CONDA SETUP | |
| ################################### | |
| - name: Set up MSVC Compiler on windows | |
| uses: ilammy/msvc-dev-cmd@v1 | |
| if: matrix.os == 'windows-latest' | |
| - name: Set up miniconda test environment | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| channels: conda-forge | |
| channel-priority: strict | |
| miniforge-variant: Miniforge3 | |
| miniforge-version: latest | |
| conda-remove-defaults: true | |
| - name: Check conda installation | |
| run: | | |
| conda info | |
| conda list | |
| - name: Install R (Windows) | |
| uses: r-lib/actions/setup-r@v2 | |
| if: matrix.os == 'windows-latest' | |
| # - name: Install compilers using conda on Linux/Mac | |
| # if: matrix.os != 'windows-latest' | |
| # run: | | |
| # conda install c-compiler cxx-compiler | |
| - name: Install Yggdrasil from conda-forge | |
| if: matrix.yggdrasil-version == 'latest' | |
| run: | | |
| conda install yggdrasil | |
| - name: Install development version of Yggdrasil | |
| if: matrix.yggdrasil-version == 'dev' | |
| run: | | |
| git clone --recurse-submodules https://github.com/cropsinsilico/yggdrasil.git | |
| cd yggdrasil | |
| git checkout topic/cache | |
| git submodule update --recursive | |
| python utils/setup_test_env.py install conda --for-development --always-yes --build-method direct | |
| - name: Install specific version of Yggdrasil from conda-forge | |
| if: matrix.yggdrasil-version != 'latest' && matrix.yggdrasil-version != 'dev' | |
| run: | | |
| conda install yggdrasil==${{ matrix.yggdrasil-version }} -y | |
| - name: Install R (Unix) | |
| if: matrix.os != 'windows-latest' && matrix.yggdrasil-version != 'dev' | |
| run: | |
| conda install yggdrasil.r | |
| - name: Check conda installation | |
| run: | | |
| conda info | |
| conda list | |
| ################################### | |
| # Validate | |
| ################################### | |
| - name: Check installed packages | |
| run: | | |
| conda list | |
| ygginfo --verbose | |
| - name: Validate models | |
| run: | | |
| python -m yggdrasil validate ./models --model-submission |