Update linters and actions (#157)

* Update pre-commit hooks

* Clean lint with updated pre-commit hooks

* Allow E704, multiple definitions per line

* Manually clean lint found by flake8

* Make test-notebooks job cancelable

* Use setup-python action instead of setup-miniconda

* Use the conda-forge channel to find nbmake

* Also use conda-forge channel for requirements

* Clean lint with pre-commit hooks

* Replace invalid API key with demo key

* Use python=3.13

* Use latest versions of landlab and pymt

* Clean lint

Author: mdpiper

.flake8

@@ -1,5 +1,5 @@
 [flake8]
-ignore = C901, E203, E266, E501, W503, B905
+ignore = C901, E203, E266, E501, E704, W503, B905
 max-line-length = 88
 max-complexity = 18
 select = B,C,E,F,W,T4,B9

.github/workflows/test-notebooks.yml

@@ -2,25 +2,26 @@ name: Test Notebooks
 
 on: [push, pull_request]
 
-jobs:
+concurrency:
+  group: ${{ github.ref }}-${{ github.workflow }}
+  cancel-in-progress: true
 
+jobs:
   test-notebooks:
 
     if:
-      github.event_name == 'push' ||
-      github.event.pull_request.head.repo.full_name != github.repository
+      github.event_name == 'push' || github.event.pull_request.head.repo.full_name != github.repository
 
     name: Test the notebooks
     runs-on: ubuntu-latest
+
     steps:
       - uses: actions/checkout@v4
 
-      - uses: conda-incubator/setup-miniconda@v3
+      - name: Install Python
+        uses: actions/setup-python@v5
         with:
-          python-version: "3.11"
-          miniforge-variant: Miniforge3
-          miniforge-version: latest
-          auto-update-conda: true
+          python-version: 3.13
 
       - name: Install nox
         run: pip install nox
@@ -29,4 +30,4 @@ jobs:
         env:
           MPLBACKEND: "Agg"
           OPENTOPOGRAPHY_API_KEY: ${{ secrets.OPENTOPOGRAPHY_API_KEY }}
-        run: nox -s test-notebooks --python "3.11"
+        run: nox -s test-notebooks --python "3.13"

.pre-commit-config.yaml

@@ -1,6 +1,6 @@
 repos:
 - repo: https://github.com/psf/black
-  rev: 23.7.0
+  rev: 25.1.0
   hooks:
   - id: black
     name: black
@@ -23,7 +23,7 @@ repos:
     additional_dependencies: [".[jupyter]"]
 
 - repo: https://github.com/nbQA-dev/nbQA
-  rev: 1.7.0
+  rev: 1.9.1
   hooks:
     - id: nbqa-pyupgrade
       args: ["--py38-plus"]
@@ -42,7 +42,7 @@ repos:
           )
 
 - repo: https://github.com/pycqa/flake8
-  rev: 6.1.0
+  rev: 7.2.0
   hooks:
   - id: flake8
     additional_dependencies:
@@ -51,20 +51,20 @@ repos:
     - flake8-simplify
 
 - repo: https://github.com/kynan/nbstripout
-  rev: 0.6.1
+  rev: 0.8.1
   hooks:
     - id: nbstripout
       description: Strip output from jupyter notebooks
       args: [--drop-empty-cells]
 
 - repo: https://github.com/asottile/pyupgrade
-  rev: v3.10.1
+  rev: v3.19.1
   hooks:
   - id: pyupgrade
     args: [--py38-plus]
 
 - repo: https://github.com/PyCQA/isort
-  rev: 5.12.0
+  rev: 6.0.1
   hooks:
   - id: isort
     files: \.py$
@@ -79,7 +79,7 @@ repos:
   # - id: hide-solution-cells
 
 - repo: https://github.com/pre-commit/pre-commit-hooks
-  rev: v4.4.0
+  rev: v5.0.0
   hooks:
     - id: check-builtin-literals
     - id: check-added-large-files

README.ipynb

@@ -2,7 +2,7 @@
  "cells": [
   {
    "cell_type": "markdown",
-   "id": "b56d3d13",
+   "id": "0",
    "metadata": {},
    "source": [
     "![Ivy logo](https://raw.githubusercontent.com/csdms/project/main/assets/CSDMS-logo-color-tagline-hor.png)\n",

lessons/landlab/landlab/.opentopography.txt

@@ -1 +1 @@
-e3d13293522b2d54ad499adf8d20159e
+demoapikeyot2022