pollen/.github/workflows/code-quality.yml at 137344ca7e329aa90ea9b09490f42a35b385a641 · cucapra/pollen · GitHub

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name: quality
on:
  push:
  pull_request:
    branches: [main]

jobs:
  python:
    runs-on: ubuntu-latest
    name: Python
    steps:
    - uses: actions/checkout@v4

    - name: ruff check
      uses: astral-sh/ruff-action@v3
      with:
        src: >-
          mygfa
          slow_odgi
          pollen_data_gen
          flatgfa-py

    - name: ruff format
      uses: astral-sh/ruff-action@v3
      with:
        args: "format --check --diff"
        src: >-
          mygfa
          slow_odgi
          pollen_data_gen
          flatgfa-py

    - name: Install uv
      uses: astral-sh/setup-uv@v5
    - name: mypy
      run: MYPYPATH=mygfa uv tool run mypy --no-namespace-packages --disallow-untyped-defs mygfa slow_odgi pollen_data_gen

  rust:
    runs-on: ubuntu-latest
    name: Rust
    env:
      RUSTFLAGS: "-Dwarnings"
    steps:
    - uses: actions/checkout@v4
    - run: rustup toolchain install stable --no-self-update
    - uses: Swatinem/rust-cache@v2
    - run: cargo check
    - run: cargo clippy
    - run: cargo fmt --check