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1 parent 94a7286 commit 08d1f8fCopy full SHA for 08d1f8f
flatgfa/src/ops/pangenotype.rs
@@ -3,6 +3,11 @@ use crate::memfile;
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use crate::namemap::NameMap;
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use memchr::memchr;
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+// TODO: This function currently combines a "specialized" GAF text parser with
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+// the matrix construction. It would be nice to disentangle these as much as
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+// possible, even if we can't reuse the more general GAF parser logic in
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+// `gaf.rs`.
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+
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pub fn make_pangenotype_matrix(gfa: &FlatGFA, gaf_files: Vec<String>) -> Vec<Vec<bool>> {
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let num_segments = gfa.segs.len();
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let mut matrix = vec![vec![false; num_segments]; gaf_files.len()];
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