Deploy for release 0.3.2 from f5c4ca5

rcannood · rcannood · commit 1c67f17c9cf9 · 2022-12-06T16:56:43.000Z
diff --git a/target/docker/convert/maxquant_to_h5ad/.config.vsh.yaml b/target/docker/convert/maxquant_to_h5ad/.config.vsh.yaml
@@ -94,5 +94,5 @@ info:
   output: "/home/runner/work/mspipelines/mspipelines/target/docker/convert/maxquant_to_h5ad"
   executable: "/home/runner/work/mspipelines/mspipelines/target/docker/convert/maxquant_to_h5ad/maxquant_to_h5ad"
   viash_version: "0.6.6"
-  git_commit: "67a176ffc49468a455c66ccfbaf51fc9195bf58c"
+  git_commit: "f5c4ca5753e082d964d7cc2f86099527ca6738f9"
   git_remote: "https://github.com/czbiohub/mspipelines"
diff --git a/target/docker/convert/maxquant_to_h5ad/maxquant_to_h5ad b/target/docker/convert/maxquant_to_h5ad/maxquant_to_h5ad
@@ -396,9 +396,9 @@ FROM dataintuitive/randpy:r4.0_py3.8_bioc3.12
 RUN :
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component convert maxquant_to_h5ad"
-LABEL org.opencontainers.image.created="2022-12-06T16:23:01Z"
+LABEL org.opencontainers.image.created="2022-12-06T16:55:22Z"
 LABEL org.opencontainers.image.source="https://github.com/czbiohub/mspipelines"
-LABEL org.opencontainers.image.revision="67a176ffc49468a455c66ccfbaf51fc9195bf58c"
+LABEL org.opencontainers.image.revision="f5c4ca5753e082d964d7cc2f86099527ca6738f9"
 LABEL org.opencontainers.image.version="0.3.2"
 VIASHDOCKER
 }
diff --git a/target/docker/convert/thermo_to_mzml/.config.vsh.yaml b/target/docker/convert/thermo_to_mzml/.config.vsh.yaml
@@ -115,5 +115,5 @@ info:
   output: "/home/runner/work/mspipelines/mspipelines/target/docker/convert/thermo_to_mzml"
   executable: "/home/runner/work/mspipelines/mspipelines/target/docker/convert/thermo_to_mzml/thermo_to_mzml"
   viash_version: "0.6.6"
-  git_commit: "67a176ffc49468a455c66ccfbaf51fc9195bf58c"
+  git_commit: "f5c4ca5753e082d964d7cc2f86099527ca6738f9"
   git_remote: "https://github.com/czbiohub/mspipelines"
diff --git a/target/docker/convert/thermo_to_mzml/thermo_to_mzml b/target/docker/convert/thermo_to_mzml/thermo_to_mzml
@@ -407,9 +407,9 @@ rm ThermoRawFileParser.zip
 
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component convert thermo_to_mzml"
-LABEL org.opencontainers.image.created="2022-12-06T16:23:02Z"
+LABEL org.opencontainers.image.created="2022-12-06T16:55:22Z"
 LABEL org.opencontainers.image.source="https://github.com/czbiohub/mspipelines"
-LABEL org.opencontainers.image.revision="67a176ffc49468a455c66ccfbaf51fc9195bf58c"
+LABEL org.opencontainers.image.revision="f5c4ca5753e082d964d7cc2f86099527ca6738f9"
 LABEL org.opencontainers.image.version="0.3.2"
 VIASHDOCKER
 }
diff --git a/target/docker/download/sync_test_resources/.config.vsh.yaml b/target/docker/download/sync_test_resources/.config.vsh.yaml
@@ -135,5 +135,5 @@ info:
   output: "/home/runner/work/mspipelines/mspipelines/target/docker/download/sync_test_resources"
   executable: "/home/runner/work/mspipelines/mspipelines/target/docker/download/sync_test_resources/sync_test_resources"
   viash_version: "0.6.6"
-  git_commit: "67a176ffc49468a455c66ccfbaf51fc9195bf58c"
+  git_commit: "f5c4ca5753e082d964d7cc2f86099527ca6738f9"
   git_remote: "https://github.com/czbiohub/mspipelines"
diff --git a/target/docker/download/sync_test_resources/sync_test_resources b/target/docker/download/sync_test_resources/sync_test_resources
@@ -420,9 +420,9 @@ FROM amazon/aws-cli:2.7.1
 RUN :
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component download sync_test_resources"
-LABEL org.opencontainers.image.created="2022-12-06T16:23:02Z"
+LABEL org.opencontainers.image.created="2022-12-06T16:55:22Z"
 LABEL org.opencontainers.image.source="https://github.com/czbiohub/mspipelines"
-LABEL org.opencontainers.image.revision="67a176ffc49468a455c66ccfbaf51fc9195bf58c"
+LABEL org.opencontainers.image.revision="f5c4ca5753e082d964d7cc2f86099527ca6738f9"
 LABEL org.opencontainers.image.version="0.3.2"
 VIASHDOCKER
 }
diff --git a/target/docker/maxquant/maxquant/.config.vsh.yaml b/target/docker/maxquant/maxquant/.config.vsh.yaml
@@ -425,5 +425,5 @@ info:
   output: "/home/runner/work/mspipelines/mspipelines/target/docker/maxquant/maxquant"
   executable: "/home/runner/work/mspipelines/mspipelines/target/docker/maxquant/maxquant/maxquant"
   viash_version: "0.6.6"
-  git_commit: "67a176ffc49468a455c66ccfbaf51fc9195bf58c"
+  git_commit: "f5c4ca5753e082d964d7cc2f86099527ca6738f9"
   git_remote: "https://github.com/czbiohub/mspipelines"
diff --git a/target/docker/maxquant/maxquant/maxquant b/target/docker/maxquant/maxquant/maxquant
@@ -543,9 +543,9 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component maxquant maxquant"
-LABEL org.opencontainers.image.created="2022-12-06T16:23:02Z"
+LABEL org.opencontainers.image.created="2022-12-06T16:55:22Z"
 LABEL org.opencontainers.image.source="https://github.com/czbiohub/mspipelines"
-LABEL org.opencontainers.image.revision="67a176ffc49468a455c66ccfbaf51fc9195bf58c"
+LABEL org.opencontainers.image.revision="f5c4ca5753e082d964d7cc2f86099527ca6738f9"
 LABEL org.opencontainers.image.version="0.3.2"
 VIASHDOCKER
 }
diff --git a/target/docker/msdial/msdial_gcms/.config.vsh.yaml b/target/docker/msdial/msdial_gcms/.config.vsh.yaml
@@ -713,5 +713,5 @@ info:
   output: "/home/runner/work/mspipelines/mspipelines/target/docker/msdial/msdial_gcms"
   executable: "/home/runner/work/mspipelines/mspipelines/target/docker/msdial/msdial_gcms/msdial_gcms"
   viash_version: "0.6.6"
-  git_commit: "67a176ffc49468a455c66ccfbaf51fc9195bf58c"
+  git_commit: "f5c4ca5753e082d964d7cc2f86099527ca6738f9"
   git_remote: "https://github.com/czbiohub/mspipelines"
diff --git a/target/docker/msdial/msdial_gcms/msdial_gcms b/target/docker/msdial/msdial_gcms/msdial_gcms
@@ -612,9 +612,9 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component msdial msdial_gcms"
-LABEL org.opencontainers.image.created="2022-12-06T16:23:02Z"
+LABEL org.opencontainers.image.created="2022-12-06T16:55:22Z"
 LABEL org.opencontainers.image.source="https://github.com/czbiohub/mspipelines"
-LABEL org.opencontainers.image.revision="67a176ffc49468a455c66ccfbaf51fc9195bf58c"
+LABEL org.opencontainers.image.revision="f5c4ca5753e082d964d7cc2f86099527ca6738f9"
 LABEL org.opencontainers.image.version="0.3.2"
 VIASHDOCKER
 }
diff --git a/target/docker/msdial/msdial_lcms/.config.vsh.yaml b/target/docker/msdial/msdial_lcms/.config.vsh.yaml
@@ -1159,5 +1159,5 @@ info:
   output: "/home/runner/work/mspipelines/mspipelines/target/docker/msdial/msdial_lcms"
   executable: "/home/runner/work/mspipelines/mspipelines/target/docker/msdial/msdial_lcms/msdial_lcms"
   viash_version: "0.6.6"
-  git_commit: "67a176ffc49468a455c66ccfbaf51fc9195bf58c"
+  git_commit: "f5c4ca5753e082d964d7cc2f86099527ca6738f9"
   git_remote: "https://github.com/czbiohub/mspipelines"
diff --git a/target/docker/msdial/msdial_lcms/msdial_lcms b/target/docker/msdial/msdial_lcms/msdial_lcms
@@ -778,9 +778,9 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component msdial msdial_lcms"
-LABEL org.opencontainers.image.created="2022-12-06T16:23:01Z"
+LABEL org.opencontainers.image.created="2022-12-06T16:55:21Z"
 LABEL org.opencontainers.image.source="https://github.com/czbiohub/mspipelines"
-LABEL org.opencontainers.image.revision="67a176ffc49468a455c66ccfbaf51fc9195bf58c"
+LABEL org.opencontainers.image.revision="f5c4ca5753e082d964d7cc2f86099527ca6738f9"
 LABEL org.opencontainers.image.version="0.3.2"
 VIASHDOCKER
 }
diff --git a/target/docker/proteomics/fastadl/.config.vsh.yaml b/target/docker/proteomics/fastadl/.config.vsh.yaml
@@ -103,5 +103,5 @@ info:
   output: "/home/runner/work/mspipelines/mspipelines/target/docker/proteomics/fastadl"
   executable: "/home/runner/work/mspipelines/mspipelines/target/docker/proteomics/fastadl/fastadl"
   viash_version: "0.6.6"
-  git_commit: "67a176ffc49468a455c66ccfbaf51fc9195bf58c"
+  git_commit: "f5c4ca5753e082d964d7cc2f86099527ca6738f9"
   git_remote: "https://github.com/czbiohub/mspipelines"
diff --git a/target/docker/proteomics/fastadl/fastadl b/target/docker/proteomics/fastadl/fastadl
@@ -406,9 +406,9 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Kenneth Verheggen"
 LABEL org.opencontainers.image.description="Companion container for running component proteomics fastadl"
-LABEL org.opencontainers.image.created="2022-12-06T16:23:02Z"
+LABEL org.opencontainers.image.created="2022-12-06T16:55:22Z"
 LABEL org.opencontainers.image.source="https://github.com/czbiohub/mspipelines"
-LABEL org.opencontainers.image.revision="67a176ffc49468a455c66ccfbaf51fc9195bf58c"
+LABEL org.opencontainers.image.revision="f5c4ca5753e082d964d7cc2f86099527ca6738f9"
 LABEL org.opencontainers.image.version="0.3.2"
 VIASHDOCKER
 }
diff --git a/target/docker/qc/rawbeans/.config.vsh.yaml b/target/docker/qc/rawbeans/.config.vsh.yaml
@@ -140,5 +140,5 @@ info:
   output: "/home/runner/work/mspipelines/mspipelines/target/docker/qc/rawbeans"
   executable: "/home/runner/work/mspipelines/mspipelines/target/docker/qc/rawbeans/rawbeans"
   viash_version: "0.6.6"
-  git_commit: "67a176ffc49468a455c66ccfbaf51fc9195bf58c"
+  git_commit: "f5c4ca5753e082d964d7cc2f86099527ca6738f9"
   git_remote: "https://github.com/czbiohub/mspipelines"
diff --git a/target/docker/qc/rawbeans/rawbeans b/target/docker/qc/rawbeans/rawbeans
@@ -418,9 +418,9 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component qc rawbeans"
-LABEL org.opencontainers.image.created="2022-12-06T16:23:02Z"
+LABEL org.opencontainers.image.created="2022-12-06T16:55:23Z"
 LABEL org.opencontainers.image.source="https://github.com/czbiohub/mspipelines"
-LABEL org.opencontainers.image.revision="67a176ffc49468a455c66ccfbaf51fc9195bf58c"
+LABEL org.opencontainers.image.revision="f5c4ca5753e082d964d7cc2f86099527ca6738f9"
 LABEL org.opencontainers.image.version="0.3.2"
 VIASHDOCKER
 }
diff --git a/target/native/download/sync_test_resources/.config.vsh.yaml b/target/native/download/sync_test_resources/.config.vsh.yaml
@@ -135,5 +135,5 @@ info:
   output: "/home/runner/work/mspipelines/mspipelines/target/native/download/sync_test_resources"
   executable: "/home/runner/work/mspipelines/mspipelines/target/native/download/sync_test_resources/sync_test_resources"
   viash_version: "0.6.6"
-  git_commit: "67a176ffc49468a455c66ccfbaf51fc9195bf58c"
+  git_commit: "f5c4ca5753e082d964d7cc2f86099527ca6738f9"
   git_remote: "https://github.com/czbiohub/mspipelines"
diff --git a/target/nextflow/convert/maxquant_to_h5ad/.config.vsh.yaml b/target/nextflow/convert/maxquant_to_h5ad/.config.vsh.yaml
@@ -94,5 +94,5 @@ info:
   output: "/home/runner/work/mspipelines/mspipelines/target/nextflow/convert/maxquant_to_h5ad"
   executable: "/home/runner/work/mspipelines/mspipelines/target/nextflow/convert/maxquant_to_h5ad/maxquant_to_h5ad"
   viash_version: "0.6.6"
-  git_commit: "67a176ffc49468a455c66ccfbaf51fc9195bf58c"
+  git_commit: "f5c4ca5753e082d964d7cc2f86099527ca6738f9"
   git_remote: "https://github.com/czbiohub/mspipelines"
diff --git a/target/nextflow/convert/maxquant_to_h5ad/main.nf b/target/nextflow/convert/maxquant_to_h5ad/main.nf
@@ -120,7 +120,7 @@ thisConfig = processConfig(jsonSlurper.parseText('''{
     "config" : "/home/runner/work/mspipelines/mspipelines/src/convert/maxquant_to_h5ad/config.vsh.yaml",
     "platform" : "nextflow",
     "viash_version" : "0.6.6",
-    "git_commit" : "67a176ffc49468a455c66ccfbaf51fc9195bf58c",
+    "git_commit" : "f5c4ca5753e082d964d7cc2f86099527ca6738f9",
     "git_remote" : "https://github.com/czbiohub/mspipelines"
   }
 }'''))
diff --git a/target/nextflow/convert/thermo_to_mzml/.config.vsh.yaml b/target/nextflow/convert/thermo_to_mzml/.config.vsh.yaml
@@ -115,5 +115,5 @@ info:
   output: "/home/runner/work/mspipelines/mspipelines/target/nextflow/convert/thermo_to_mzml"
   executable: "/home/runner/work/mspipelines/mspipelines/target/nextflow/convert/thermo_to_mzml/thermo_to_mzml"
   viash_version: "0.6.6"
-  git_commit: "67a176ffc49468a455c66ccfbaf51fc9195bf58c"
+  git_commit: "f5c4ca5753e082d964d7cc2f86099527ca6738f9"
   git_remote: "https://github.com/czbiohub/mspipelines"
diff --git a/target/nextflow/convert/thermo_to_mzml/main.nf b/target/nextflow/convert/thermo_to_mzml/main.nf
@@ -150,7 +150,7 @@ thisConfig = processConfig(jsonSlurper.parseText('''{
     "config" : "/home/runner/work/mspipelines/mspipelines/src/convert/thermo_to_mzml/config.vsh.yaml",
     "platform" : "nextflow",
     "viash_version" : "0.6.6",
-    "git_commit" : "67a176ffc49468a455c66ccfbaf51fc9195bf58c",
+    "git_commit" : "f5c4ca5753e082d964d7cc2f86099527ca6738f9",
     "git_remote" : "https://github.com/czbiohub/mspipelines"
   }
 }'''))
diff --git a/target/nextflow/download/sync_test_resources/.config.vsh.yaml b/target/nextflow/download/sync_test_resources/.config.vsh.yaml
@@ -135,5 +135,5 @@ info:
   output: "/home/runner/work/mspipelines/mspipelines/target/nextflow/download/sync_test_resources"
   executable: "/home/runner/work/mspipelines/mspipelines/target/nextflow/download/sync_test_resources/sync_test_resources"
   viash_version: "0.6.6"
-  git_commit: "67a176ffc49468a455c66ccfbaf51fc9195bf58c"
+  git_commit: "f5c4ca5753e082d964d7cc2f86099527ca6738f9"
   git_remote: "https://github.com/czbiohub/mspipelines"
diff --git a/target/nextflow/download/sync_test_resources/main.nf b/target/nextflow/download/sync_test_resources/main.nf
@@ -168,7 +168,7 @@ thisConfig = processConfig(jsonSlurper.parseText('''{
     "config" : "/home/runner/work/mspipelines/mspipelines/src/download/sync_test_resources/config.vsh.yaml",
     "platform" : "nextflow",
     "viash_version" : "0.6.6",
-    "git_commit" : "67a176ffc49468a455c66ccfbaf51fc9195bf58c",
+    "git_commit" : "f5c4ca5753e082d964d7cc2f86099527ca6738f9",
     "git_remote" : "https://github.com/czbiohub/mspipelines"
   }
 }'''))
diff --git a/target/nextflow/maxquant/maxquant/.config.vsh.yaml b/target/nextflow/maxquant/maxquant/.config.vsh.yaml
@@ -425,5 +425,5 @@ info:
   output: "/home/runner/work/mspipelines/mspipelines/target/nextflow/maxquant/maxquant"
   executable: "/home/runner/work/mspipelines/mspipelines/target/nextflow/maxquant/maxquant/maxquant"
   viash_version: "0.6.6"
-  git_commit: "67a176ffc49468a455c66ccfbaf51fc9195bf58c"
+  git_commit: "f5c4ca5753e082d964d7cc2f86099527ca6738f9"
   git_remote: "https://github.com/czbiohub/mspipelines"
diff --git a/target/nextflow/maxquant/maxquant/main.nf b/target/nextflow/maxquant/maxquant/main.nf
@@ -451,7 +451,7 @@ thisConfig = processConfig(jsonSlurper.parseText('''{
     "config" : "/home/runner/work/mspipelines/mspipelines/src/maxquant/maxquant/config.vsh.yaml",
     "platform" : "nextflow",
     "viash_version" : "0.6.6",
-    "git_commit" : "67a176ffc49468a455c66ccfbaf51fc9195bf58c",
+    "git_commit" : "f5c4ca5753e082d964d7cc2f86099527ca6738f9",
     "git_remote" : "https://github.com/czbiohub/mspipelines"
   }
 }'''))
diff --git a/target/nextflow/msdial/msdial_gcms/.config.vsh.yaml b/target/nextflow/msdial/msdial_gcms/.config.vsh.yaml
@@ -713,5 +713,5 @@ info:
   output: "/home/runner/work/mspipelines/mspipelines/target/nextflow/msdial/msdial_gcms"
   executable: "/home/runner/work/mspipelines/mspipelines/target/nextflow/msdial/msdial_gcms/msdial_gcms"
   viash_version: "0.6.6"
-  git_commit: "67a176ffc49468a455c66ccfbaf51fc9195bf58c"
+  git_commit: "f5c4ca5753e082d964d7cc2f86099527ca6738f9"
   git_remote: "https://github.com/czbiohub/mspipelines"
diff --git a/target/nextflow/msdial/msdial_gcms/main.nf b/target/nextflow/msdial/msdial_gcms/main.nf
@@ -812,7 +812,7 @@ thisConfig = processConfig(jsonSlurper.parseText('''{
     "config" : "/home/runner/work/mspipelines/mspipelines/src/msdial/msdial_gcms/config.vsh.yaml",
     "platform" : "nextflow",
     "viash_version" : "0.6.6",
-    "git_commit" : "67a176ffc49468a455c66ccfbaf51fc9195bf58c",
+    "git_commit" : "f5c4ca5753e082d964d7cc2f86099527ca6738f9",
     "git_remote" : "https://github.com/czbiohub/mspipelines"
   }
 }'''))
diff --git a/target/nextflow/msdial/msdial_lcms/.config.vsh.yaml b/target/nextflow/msdial/msdial_lcms/.config.vsh.yaml
@@ -1159,5 +1159,5 @@ info:
   output: "/home/runner/work/mspipelines/mspipelines/target/nextflow/msdial/msdial_lcms"
   executable: "/home/runner/work/mspipelines/mspipelines/target/nextflow/msdial/msdial_lcms/msdial_lcms"
   viash_version: "0.6.6"
-  git_commit: "67a176ffc49468a455c66ccfbaf51fc9195bf58c"
+  git_commit: "f5c4ca5753e082d964d7cc2f86099527ca6738f9"
   git_remote: "https://github.com/czbiohub/mspipelines"
diff --git a/target/nextflow/msdial/msdial_lcms/main.nf b/target/nextflow/msdial/msdial_lcms/main.nf
@@ -1311,7 +1311,7 @@ thisConfig = processConfig(jsonSlurper.parseText('''{
     "config" : "/home/runner/work/mspipelines/mspipelines/src/msdial/msdial_lcms/config.vsh.yaml",
     "platform" : "nextflow",
     "viash_version" : "0.6.6",
-    "git_commit" : "67a176ffc49468a455c66ccfbaf51fc9195bf58c",
+    "git_commit" : "f5c4ca5753e082d964d7cc2f86099527ca6738f9",
     "git_remote" : "https://github.com/czbiohub/mspipelines"
   }
 }'''))
diff --git a/target/nextflow/qc/rawbeans/.config.vsh.yaml b/target/nextflow/qc/rawbeans/.config.vsh.yaml
@@ -140,5 +140,5 @@ info:
   output: "/home/runner/work/mspipelines/mspipelines/target/nextflow/qc/rawbeans"
   executable: "/home/runner/work/mspipelines/mspipelines/target/nextflow/qc/rawbeans/rawbeans"
   viash_version: "0.6.6"
-  git_commit: "67a176ffc49468a455c66ccfbaf51fc9195bf58c"
+  git_commit: "f5c4ca5753e082d964d7cc2f86099527ca6738f9"
   git_remote: "https://github.com/czbiohub/mspipelines"
diff --git a/target/nextflow/qc/rawbeans/main.nf b/target/nextflow/qc/rawbeans/main.nf
@@ -167,7 +167,7 @@ thisConfig = processConfig(jsonSlurper.parseText('''{
     "config" : "/home/runner/work/mspipelines/mspipelines/src/qc/rawbeans/config.vsh.yaml",
     "platform" : "nextflow",
     "viash_version" : "0.6.6",
-    "git_commit" : "67a176ffc49468a455c66ccfbaf51fc9195bf58c",
+    "git_commit" : "f5c4ca5753e082d964d7cc2f86099527ca6738f9",
     "git_remote" : "https://github.com/czbiohub/mspipelines"
   }
 }'''))
