Scripts and concepts for statistical analysis of microbiome data. Important to note that microbiome data is compositional in nature.
- Normalisation methods-
- https://github.com/maxibor/microbiomeNormalization (package- compositions)
- https://cran.r-project.org/web/packages/Hotelling/Hotelling.pdf (package- hotelling)
- https://search.r-project.org/CRAN/refmans/compositions/html/clr.html
- https://cran.r-project.org/web/packages/compositions/index.html
- zcompositions R package
- ALDEX2 (Bioconductor)- includes clr and it deals with compositional data using log-ratio transformation