From 931757df252500cd6b9063ff54bb07e05160046c Mon Sep 17 00:00:00 2001 From: Kabilar Gunalan Date: Fri, 14 Mar 2025 11:58:56 -0500 Subject: [PATCH 1/4] Add BIDS validator link --- docs/user-guide-sharing/validating-files.md | 9 ++++++++- 1 file changed, 8 insertions(+), 1 deletion(-) diff --git a/docs/user-guide-sharing/validating-files.md b/docs/user-guide-sharing/validating-files.md index ff3970aa..035f1fe1 100644 --- a/docs/user-guide-sharing/validating-files.md +++ b/docs/user-guide-sharing/validating-files.md @@ -1,4 +1,7 @@ -# Validating NWB Files +# Validating Files + +## Validating NWB Files + To be accepted by DANDI, NWB files must conform to criteria that are enforced via three levels of validation: ## NWB File Validation @@ -32,3 +35,7 @@ These requirements are specified in the Passing all of these levels of validation can sometimes be tricky. If you have any questions, please ask them via the [DANDI Help Desk](https://github.com/dandi/helpdesk/discussions) and we would be happy to assist you. + +## Validating BIDS Files + +Once your files are converted to the BIDS standard, perform validation of the files using the [BIDS validator](https://bids.neuroimaging.io/tools/validator.html). From e30d2f1e06e11851655c6710298643b6a23e0de7 Mon Sep 17 00:00:00 2001 From: Kabilar Gunalan Date: Fri, 14 Mar 2025 12:03:49 -0500 Subject: [PATCH 2/4] Add BIDS converter and specification links --- docs/user-guide-sharing/converting-data/index.md | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/docs/user-guide-sharing/converting-data/index.md b/docs/user-guide-sharing/converting-data/index.md index f10dc9df..67a8fe54 100644 --- a/docs/user-guide-sharing/converting-data/index.md +++ b/docs/user-guide-sharing/converting-data/index.md @@ -5,4 +5,7 @@ Data contributed to DANDI must be standardized into one of the formats accepted Most of the data on DANDI is in Neurodata Without Borders (NWB), a data standard designed for sharing data from neurophysiology experiments. See [Converting data to NWB](./nwb/index.md) for guidance in how to convert your data to NWB and publish on DANDI. -DANDI also supports the [Brain Imaging Data Format (BIDS)](https://bids.neuroimaging.io/). See [Getting Started with BIDS](https://bids.neuroimaging.io/getting_started/index.html) for more information. \ No newline at end of file +DANDI also supports the [Brain Imaging Data Format (BIDS)](https://bids.neuroimaging.io/). For more information, see: +- [Getting Started with BIDS](https://bids.neuroimaging.io/getting_started/index.html) +- [BIDS converters](https://bids.neuroimaging.io/tools/converters.html) for conversion of raw data to a BIDS dataset +- [BIDS specification](https://bids-specification.readthedocs.io) From b48adc4b81b3ee684d6d15befbdcbe0715efc262 Mon Sep 17 00:00:00 2001 From: Kabilar Gunalan Date: Fri, 14 Mar 2025 13:27:12 -0500 Subject: [PATCH 3/4] Update docs/user-guide-sharing/converting-data/index.md --- docs/user-guide-sharing/converting-data/index.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/user-guide-sharing/converting-data/index.md b/docs/user-guide-sharing/converting-data/index.md index 67a8fe54..fc9c2d88 100644 --- a/docs/user-guide-sharing/converting-data/index.md +++ b/docs/user-guide-sharing/converting-data/index.md @@ -5,7 +5,7 @@ Data contributed to DANDI must be standardized into one of the formats accepted Most of the data on DANDI is in Neurodata Without Borders (NWB), a data standard designed for sharing data from neurophysiology experiments. See [Converting data to NWB](./nwb/index.md) for guidance in how to convert your data to NWB and publish on DANDI. -DANDI also supports the [Brain Imaging Data Format (BIDS)](https://bids.neuroimaging.io/). For more information, see: +DANDI also supports the [Brain Imaging Data Structure (BIDS)](https://bids.neuroimaging.io/). For more information, see: - [Getting Started with BIDS](https://bids.neuroimaging.io/getting_started/index.html) - [BIDS converters](https://bids.neuroimaging.io/tools/converters.html) for conversion of raw data to a BIDS dataset - [BIDS specification](https://bids-specification.readthedocs.io) From 92c4506afbaf67904a94e269e2823cf147ddaa8a Mon Sep 17 00:00:00 2001 From: Ben Dichter Date: Fri, 28 Mar 2025 18:08:38 -0400 Subject: [PATCH 4/4] Update navigation title for validating files in mkdocs.yml --- mkdocs.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/mkdocs.yml b/mkdocs.yml index fe1760e5..88233c65 100644 --- a/mkdocs.yml +++ b/mkdocs.yml @@ -46,7 +46,7 @@ nav: - NWB GUIDE: "user-guide-sharing/converting-data/nwb/nwb-guide.md" - NeuroConv: "user-guide-sharing/converting-data/nwb/neuroconv.md" - PyNWB and MatNWB: "user-guide-sharing/converting-data/nwb/pynwb-matnwb.md" - - Validating NWB Files: "user-guide-sharing/validating-files.md" + - Validating Files: "user-guide-sharing/validating-files.md" - Uploading Data: "user-guide-sharing/uploading-data.md" - Dandiset Metadata: "user-guide-sharing/dandiset-metadata.md" - Publishing Dandisets: "user-guide-sharing/publishing-dandisets.md"