code whitespace cleaning

Author: danielpeter

EXAMPLES/regional_EMC_model/REF_KERNEL/output.log

@@ -5,14 +5,14 @@ directory: /Users/Shared/SPECFEM3D_GLOBE/EXAMPLES/regional_EMC_model
 
    setting up example...
 
-Changed simulation_type to 1 and save_forward = .true. in Par_file 
+Changed simulation_type to 1 and save_forward = .true. in Par_file
 
 #########################################################
 forward simulation
 #########################################################
 (running forward simulation with saving forward wavefield)
 
-Changed simulation_type to 1 and save_forward = .true. in Par_file 
+Changed simulation_type to 1 and save_forward = .true. in Par_file
 
   running script...
 
@@ -22,7 +22,7 @@ Tue Nov 19 10:08:50 CET 2024
 starting MPI mesher on 4 processors
 
  simulation time step size:
-   DT determined =   0.11500000000000000     
+   DT determined =   0.11500000000000000
    Par_file: user overrides with specified DT =    5.0000000000000003E-002
 
  using local mesh layout:
@@ -41,7 +41,7 @@ Tue Nov 19 10:09:01 CET 2024
 starting run in current directory /Users/Shared/SPECFEM3D_GLOBE/EXAMPLES/regional_EMC_model
 
  simulation time step size:
-   DT determined =   0.11500000000000000     
+   DT determined =   0.11500000000000000
    Par_file: user overrides with specified DT =    5.0000000000000003E-002
 
  using local mesh layout:
@@ -78,19 +78,19 @@ xcreate_adjsrc_traveltime -> /Users/Shared/SPECFEM3D_GLOBE/EXAMPLES/regional_EMC
 running adjoint source creation
 
  ifile =            0   lrot =  F
-  
+
  reading asc file IU.COLA.BXE.sem.ascii ...
  reading asc file IU.COLA.BXN.sem.ascii ...
  reading asc file IU.COLA.BXZ.sem.ascii ...
-  
- start time:  -4.5000000000000000     
+
+ start time:  -4.5000000000000000
  time step:   5.0000190000000444E-002
  number of steps:        3200
-  
+
  i =            1 norm =    1.3382609814114356E-010
  i =            2 norm =    7.4112161423547478E-010
  i =            3 norm =    2.7333060200934709E-010
-  
+
  write to asc file IU.COLA.BXE.sem.ascii.adj
  write to asc file IU.COLA.BXN.sem.ascii.adj
  write to asc file IU.COLA.BXZ.sem.ascii.adj
@@ -106,7 +106,7 @@ kernel simulation
 #########################################################
 (running kernel simulation: SIMULATION_TYPE == 3)
 
-Changed simulation_type to 3 in Par_file 
+Changed simulation_type to 3 in Par_file
 
   running script...
 
@@ -116,7 +116,7 @@ Tue Nov 19 10:09:18 CET 2024
 starting run in current directory /Users/Shared/SPECFEM3D_GLOBE/EXAMPLES/regional_EMC_model
 
  simulation time step size:
-   DT determined =   0.11500000000000000     
+   DT determined =   0.11500000000000000
    Par_file: user overrides with specified DT =    5.0000000000000003E-002
 
  using local mesh layout:

src/meshfem3D/model_1dref.f90

@@ -47,7 +47,7 @@
 ! A radial model of anelasticity consistent with long period surface wave attenuation,
 ! Bull. Seism. Soc. Am., 86, 144-158
 !
-! 1-D profiles: see http://www.iris.edu/ds/products/emc-stw105/
+! 1-D profiles: see https://ds.iris.edu/ds/products/emc-stw105/
 !               internal discontinuities: contains a 410-km and 650-km discontinuity
 !--------------------------------------------------------------------------------------------------
 

src/shared/read_compute_parameters.f90

@@ -105,7 +105,7 @@ subroutine rcp_set_compute_parameters()
     ! info
     if (REGIONAL_MESH_CUTOFF) then
       print *,'**************'
-      print *,'Warning: REGIONAL_MESH_CUTOFF is not supported for global simulations (NCHUNKS==6), will turn it off for now...'
+      print *,'Warning: REGIONAL_MESH_CUTOFF is not supported for global simulations (NCHUNKS == 6), will turn it off for now...'
       print *,'**************'
     endif
     REGIONAL_MESH_CUTOFF = .false.

utils/scripts/clean_listings_specfem.py

@@ -27,7 +27,7 @@
 fortran_file_extensions = ['.fh', '.f90', '.F90', '.fh.in']
 
 # Define the list of file extensions to be processed as general formatting
-general_file_extensions = ['.bash', '.c', '.cpp','.csh','.cu','.h','.h.in','.pl','.tex','.txt','.sh','.rb', '.md']
+general_file_extensions = ['.bash', '.c', '.cpp','.csh','.cu','.h','.h.in','.pl','.tex','.txt','.sh','.rb', '.md', '.log']
 
 # Define the list of directories to be excluded (these are mostly submodules included in the source repositories)
 exclude_dirs = ['.git', 'm4', './utils/ADJOINT_TOMOGRAPHY_TOOLS/flexwin', './src/inverse_problem_for_source/pyCMT3D']