datajoint.bib

@article{reimer_pupil_2014,
	title = {Pupil {Fluctuations} {Track} {Fast} {Switching} of {Cortical} {States} during {Quiet} {Wakefulness}},
	volume = {84},
	issn = {0896-6273},
	doi = {10.1016/j.neuron.2014.09.033},
	number = {2},
	journal = {Neuron},
	author = {Reimer, Jacob and Froudarakis, Emmanouil and Cadwell, Cathryn R. and Yatsenko, Dimitri and Denfield, George H. and Tolias, Andreas S.},
	month = oct,
	year = {2014},
	pages = {355--362},
}

@article{froudarakis_population_2014,
	title = {Population code in mouse {V}1 facilitates readout of natural scenes through increased sparseness},
	volume = {17},
	copyright = {© 2014 Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved.},
	issn = {1097-6256},
	doi = {10.1038/nn.3707},
	language = {en},
	number = {6},
	journal = {Nature Neuroscience},
	author = {Froudarakis, Emmanouil and Berens, Philipp and Ecker, Alexander S. and Cotton, R. James and Sinz, Fabian H. and Yatsenko, Dimitri and Saggau, Peter and Bethge, Matthias and Tolias, Andreas S.},
	month = jun,
	year = {2014},
	pages = {851--857},
}

@article{smith_sharing_2015,
  title={Why sharing matters for electrophysiological data analysis},
  author={Smith, Leslie S},
  journal={Brain research bulletin},
  year={2015},
  publisher={Elsevier}
}

@article{manyam_relax_2012,
	title = {Relax with {CouchDB} — {Into} the non-relational {DBMS} era of bioinformatics},
	volume = {100},
	issn = {0888-7543},
	doi = {10.1016/j.ygeno.2012.05.006},
	number = {1},
	journal = {Genomics},
	author = {Manyam, Ganiraju and Payton, Michelle A. and Roth, Jack A. and Abruzzo, Lynne V. and Coombes, Kevin R.},
	month = jul,
	year = {2012},
	pages = {1--7},
}

@book{date_sql_2011,
	title = {{SQL} and relational theory: how to write accurate {SQL} code},
	publisher = {O'Reilly Media, Inc.},
	author = {Date, Chris},
	year = {2011}
}

@article{gray_scientific_2005,
	title = {Scientific {Data} {Management} in the {Coming} {Decade}},
	volume = {34},
	number = {4},
	journal = {ACM SIGMOD Record},
	author = {Gray, Jim and Liu, David T. and Nieto-Santisteban, Maria A. and Szalay, Alexander S. and Heber, Gerd and DeWitt, David},
	month = jan,
	year = {2005},
	note = {also as MSR-TR-2005-10},
	pages = {35--41},
}

@article{maze_analytical_2014,
	title = {Analytical tools and current challenges in the modern era of neuroepigenomics},
	volume = {17},
	copyright = {© 2014 Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved.},
	issn = {1097-6256},
	doi = {10.1038/nn.3816},
	language = {en},
	number = {11},
	journal = {Nature Neuroscience},
	author = {Maze, Ian and Shen, Li and Zhang, Bin and Garcia, Benjamin A. and Shao, Ningyi and Mitchell, Amanda and Sun, HaoSheng and Akbarian, Schahram and Allis, C. David and Nestler, Eric J.},
	month = nov,
	year = {2014},
	pages = {1476--1490},
}

@article{eglen_data_2014,
  title={A data repository and analysis framework for spontaneous neural activity recordings in developing retina},
  author={Eglen, Stephen John and Weeks, Michael and Jessop, Mark and Simonotto, Jennifer and Jackson, Tom and Sernagor, Evelyne},
  journal={GigaScience},
  volume={3},
  number={1},
  pages={3},
  year={2014}
}

@misc{neuroshare,
  title = {Neuroshare: Open data specifications and software for neurophysiology},
  howpublished = {\url{http://neuroshare.org}},
  note = {Accessed: 2015-11-30}
}

@misc{carmen,
  title = {{CARMEN} Virtual Laboratory for Electrophysiology},
  howpublished = {\url{https://portal.carmen.org.uk}},
  note = {Accessed: 2015-11-30}
}

@misc{crcns,
  title = {Collaborative Research in Computational Neuroscience -- Data sharing},
  howpublished = {\url{http://crcns.org}},
  note = {Accessed: 2015-11-30}
}

@article{teeters_data_2008,
  title={Data sharing for computational neuroscience},
  author={Teeters, Jeffrey L and Harris, Kenneth D and Millman, K Jarrod and Olshausen, Bruno A and Sommer, Friedrich T},
  journal={Neuroinformatics},
  volume={6},
  number={1},
  pages={47--55},
  year={2008},
  publisher={Springer}
}

@article{teeters_neurodata_2015,
  title={Neurodata Without Borders: Creating a Common Data Format for Neurophysiology},
  author={Teeters, Jeffery L and Godfrey, Keith and Young, Rob and Dang, Chinh and Friedsam, Claudia and Wark, Barry and Asari, Hiroki and Peron, Simon and Li, Nuo and Peyrache, Adrien and others},
  journal={Neuron},
  volume={88},
  number={4},
  pages={629--634},
  year={2015},
  publisher={Elsevier}
}

@article{herz_2008,
  title={G-Node: an integrated tool-sharing platform to support cellular and systems neurophysiology in the age of global neuroinformatics},
  author={Herz, Andreas VM and Meier, Ralph and Nawrot, Martin P and Schiegel, Willi and Zito, Tiziano},
  journal={Neural Networks},
  volume={21},
  number={8},
  pages={1070--1075},
  year={2008},
  publisher={Elsevier}
}
@article{mahmud2012sigmate,
  title={SigMate: a MATLAB-based automated tool for extracellular neuronal signal processing and analysis},
  author={Mahmud, Mufti and Bertoldo, Alessandra and Girardi, Stefano and Maschietto, Marta and Vassanelli, Stefano},
  journal={Journal of neuroscience methods},
  volume={207},
  number={1},
  pages={97--112},
  year={2012},
  publisher={Elsevier}
}

@article{helmer_enabling_2011,
	title = {Enabling collaborative research using the {Biomedical} {Informatics} {Research} {Network} ({BIRN})},
	volume = {18},
	issn = {1067-5027},
	doi = {10.1136/amiajnl-2010-000032},
	number = {4},
	journal = {Journal of the American Medical Informatics Association : JAMIA},
	author = {Helmer, Karl G and Ambite, Jose Luis and Ames, Joseph and Ananthakrishnan, Rachana and Burns, Gully and Chervenak, Ann L and Foster, Ian and Liming, Lee and Keator, David and Macciardi, Fabio and Madduri, Ravi and Navarro, John-Paul and Potkin, Steven and Rosen, Bruce and Ruffins, Seth and Schuler, Robert and Turner, Jessica A and Toga, Arthur and Williams, Christina and Kesselman, Carl},
	year = {2011},
	pmid = {21515543},
	pmcid = {PMC3128398},
	pages = {416--422},
}

@article{editorial_focus_2014,
	title = {Focus on big data},
	volume = {17},
	copyright = {© 2014 Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved.},
	issn = {1097-6256},
	doi = {10.1038/nn.3856},
	language = {en},
	number = {11},
	journal = {Nature Neuroscience},
	author = {Editorial},
	month = nov,
	year = {2014},
	pages = {1429--1429},
}

@article{howell_how_2004,
	series = {Computational {Neuroscience}: {Trends} in {Research} 2004},
	title = {How do we get the data to build computational models?},
	volume = {58–60},
	issn = {0925-2312},
	doi = {10.1016/j.neucom.2004.01.173},
	journal = {Neurocomputing},
	author = {Howell, F. and Cannon, R. and Goddard, N.},
	month = jun,
	year = {2004},
	pages = {1103--1108},
}

@article{ludascher_managing_2006,
	title = {Managing scientific data: {From} data integration to scientific workflows*},
	volume = {397},
	issn = {0072-1077,},
	shorttitle = {Managing scientific data},
	doi = {10.1130/2006.2397(08)},
	language = {en},
	journal = {Geological Society of America Special Papers},
	author = {Ludäscher, Bertram and Lin, Kai and Bowers, Shawn and Jaeger-Frank, Efrat and Brodaric, Boyan and Baru, Chaitan},
	month = jan,
	year = {2006},
	pages = {109--129},
}

@article{lynch_big_2008,
	title = {Big data: {How} do your data grow?},
	volume = {455},
	copyright = {© 2008 Nature Publishing Group},
	issn = {0028-0836},
	shorttitle = {Big data},
	doi = {10.1038/455028a},
	language = {en},
	number = {7209},
	journal = {Nature},
	author = {Lynch, Clifford},
	month = sep,
	year = {2008},
	pages = {28--29},
}

@article{poldrack_making_2014,
	title = {Making big data open: data sharing in neuroimaging},
	volume = {17},
	copyright = {© 2014 Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved.},
	issn = {1097-6256},
	shorttitle = {Making big data open},
	doi = {10.1038/nn.3818},
	language = {en},
	number = {11},
	journal = {Nature Neuroscience},
	author = {Poldrack, Russell A. and Gorgolewski, Krzysztof J.},
	month = nov,
	year = {2014},
	pages = {1510--1517},
}

@article{anderson_issues_2007,
	title = {Issues in {Biomedical} {Research} {Data} {Management} and {Analysis}: {Needs} and {Barriers}},
	volume = {14},
	issn = {1067-5027},
	shorttitle = {Issues in {Biomedical} {Research} {Data} {Management} and {Analysis}},
	doi = {10.1197/jamia.M2114},
	number = {4},
	journal = {Journal of the American Medical Informatics Association},
	author = {Anderson, Nicholas R. and Lee, E. Sally and Brockenbrough, J. Scott and Minie, Mark E. and Fuller, Sherrilynne and Brinkley, James and Tarczy-Hornoch, Peter},
	month = jul,
	year = {2007},
	pages = {478--488},
}

@article{howe_big_2008,
	title = {Big data: {The} future of biocuration},
	volume = {455},
	copyright = {© 2008 Nature Publishing Group},
	issn = {0028-0836},
	shorttitle = {Big data},
	doi = {10.1038/455047a},
	language = {en},
	number = {7209},
	journal = {Nature},
	author = {Howe, Doug and Costanzo, Maria and Fey, Petra and Gojobori, Takashi and Hannick, Linda and Hide, Winston and Hill, David P. and Kania, Renate and Schaeffer, Mary and St Pierre, Susan and Twigger, Simon and White, Owen and Yon Rhee, Seung},
	month = sep,
	year = {2008},
	pages = {47--50},
}

@article{kandel_neuroscience_2013,
	title = {Neuroscience thinks big (and collaboratively)},
	volume = {14},
	copyright = {© 2013 Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved.},
	issn = {1471-003X},
	doi = {10.1038/nrn3578},
	language = {en},
	number = {9},
	journal = {Nature Reviews Neuroscience},
	author = {Kandel, Eric R. and Markram, Henry and Matthews, Paul M. and Yuste, Rafael and Koch, Christof},
	month = sep,
	year = {2013},
	pages = {659--664},
}

@article{sejnowski_putting_2014,
	title = {Putting big data to good use in neuroscience},
	volume = {17},
	copyright = {© 2014 Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved.},
	issn = {1097-6256},
	doi = {10.1038/nn.3839},
	language = {en},
	number = {11},
	journal = {Nature Neuroscience},
	author = {Sejnowski, Terrence J. and Churchland, Patricia S. and Movshon, J. Anthony},
	month = nov,
	year = {2014},
	pages = {1440--1441},
}

@article{small_database-managed_2009,
	series = {{fMRI}: {Advances}, problems, and the future},
	title = {Database-managed {Grid}-enabled analysis of neuroimaging data: {The} {CNARI} framework},
	volume = {73},
	issn = {0167-8760},
	shorttitle = {Database-managed {Grid}-enabled analysis of neuroimaging data},
	doi = {10.1016/j.ijpsycho.2009.01.010},
	number = {1},
	journal = {International Journal of Psychophysiology},
	author = {Small, Steven L. and Wilde, Michael and Kenny, Sarah and Andric, Michael and Hasson, Uri},
	month = jul,
	year = {2009},
	pages = {62--72},
}

@article{pittendrigh_neurosys_2003,
	title = {Neurosys},
	volume = {1},
	issn = {1539-2791, 1559-0089},
	doi = {10.1007/s12021-003-0003-0},
	language = {en},
	number = {2},
	journal = {Neuroinformatics},
	author = {Pittendrigh, Sandy and Jacobs, Gwen},
	month = jun,
	year = {2003},
	pages = {167--176},
}

@inproceedings{brown_overview_2010,
	address = {New York, NY, USA},
	series = {{SIGMOD} '10},
	title = {Overview of {sciDB}: {Large} {Scale} {Array} {Storage}, {Processing} and {Analysis}},
	isbn = {978-1-4503-0032-2},
	shorttitle = {Overview of {sciDB}},
	doi = {10.1145/1807167.1807271},
	booktitle = {Proceedings of the 2010 {ACM} {SIGMOD} {International} {Conference} on {Management} of {Data}},
	publisher = {ACM},
	author = {Brown, Paul G.},
	year = {2010},
	pages = {963--968}
}

@article{schutter_review_2009,
	title = {Review of {Papers} {Describing} {Neuroinformatics} {Software}},
	volume = {7},
	issn = {1539-2791, 1559-0089},
	doi = {10.1007/s12021-009-9058-x},
	language = {en},
	number = {4},
	journal = {Neuroinformatics},
	author = {Schutter, Erik De and Ascoli, Giorgio A. and Kennedy, David N.},
	month = dec,
	year = {2009},
	pages = {211--212},
}

@article{shi_synapticdb_2011,
	title = {{SynapticDB}, {Effective} {Web}-based {Management} and {Sharing} of {Data} from {Serial} {Section} {Electron} {Microscopy}},
	volume = {9},
	issn = {1539-2791, 1559-0089},
	doi = {10.1007/s12021-010-9088-4},
	language = {en},
	number = {1},
	journal = {Neuroinformatics},
	author = {Shi, Bitao and Bourne, Jennifer and Harris, Kristen M.},
	month = mar,
	year = {2011},
	pages = {39--57}
}

@article{manyam_relax_2012-1,
	title = {Relax with {CouchDB} — {Into} the non-relational {DBMS} era of bioinformatics},
	volume = {100},
	issn = {0888-7543},
	doi = {10.1016/j.ygeno.2012.05.006},
	number = {1},
	journal = {Genomics},
	author = {Manyam, Ganiraju and Payton, Michelle A. and Roth, Jack A. and Abruzzo, Lynne V. and Coombes, Kevin R.},
	month = jul,
	year = {2012},
	pages = {1--7},
}

@article{codd_relational_1970,
	title = {A {Relational} {Model} of {Data} for {Large} {Shared} {Data} {Banks}},
	volume = {13},
	issn = {0001-0782},
	doi = {10.1145/362384.362685},
	number = {6},
	journal = {Commun. ACM},
	author = {Codd, E. F.},
	month = jun,
	year = {1970},
	pages = {377--387},
}

@article{gunay_database_2009,
	title = {Database {Analysis} of {Simulated} and {Recorded} {Electrophysiological} {Datasets} with {PANDORA}’s {Toolbox}},
	volume = {7},
	issn = {1539-2791, 1559-0089},
	doi = {10.1007/s12021-009-9048-z},
	language = {en},
	number = {2},
	journal = {Neuroinformatics},
	author = {Günay, Cengiz and Edgerton, Jeremy R. and Li, Su and Sangrey, Thomas and Prinz, Astrid A. and Jaeger, Dieter},
	month = jun,
	year = {2009},
	pages = {93--111},
}

@incollection{crook_xml_2007,
	series = {Methods in {Molecular} {Biology}™},
	title = {{XML} for {Data} {Representation} and {Model} {Specification} in {Neuroscience}},
	copyright = {©2007 Humana Press},
	isbn = {978-1-58829-720-4 978-1-59745-520-6},
	language = {en},
	number = {401},
	booktitle = {Neuroinformatics},
	publisher = {Humana Press},
	author = {Crook, Sharon M. and Howell, Fred W.},
	month = jan,
	year = {2007},
	pages = {53--66},
}

@article{ikeno_development_2007,
	series = {Computational {Neuroscience}: {Trends} in {Research} 2007 {Computational} {Neuroscience} 2006},
	title = {Development and application of {CMS}-based database modules for neuroinformatics},
	volume = {70},
	issn = {0925-2312},
	doi = {10.1016/j.neucom.2006.10.123},
	number = {10–12},
	journal = {Neurocomputing},
	author = {Ikeno, Hidetoshi and Nishioka, Takuto and Hachida, Takuya and Kanzaki, Ryohei and Seki, Yoichi and Ohzawa, Izumi and Usui, Shiro},
	month = jun,
	year = {2007},
	pages = {2122--2128},
}

@incollection{wang_database_2008,
	title = {Database {Management} {System} for {Protein} {Structure} {Data}},
	copyright = {©2008 Springer Science+Business Media B.V.},
	isbn = {978-1-4020-8734-9 978-1-4020-8735-6},
	language = {en},
	booktitle = {Innovations and {Advanced} {Techniques} in {Systems}, {Computing} {Sciences} and {Software} {Engineering}},
	publisher = {Springer Netherlands},
	author = {Wang, Yanchao and Sunderraman, Rajshekhar},
	editor = {Elleithy, Khaled},
	month = jan,
	year = {2008},
	pages = {526--531}
}

@article{freier_biodataserver:_2002,
	title = {{BioDataServer}: {A} {SQL}-{Based} {Service} for the {Online} {Integration} of {Life} {Science} {Data}},
	volume = {2},
	shorttitle = {{BioDataServer}},
	number = {2},
	journal = {In Silico Biology},
	author = {Freier, Andreas and Hofestädt, Ralf and Lange, Matthias and Scholz, Uwe and Stephanik, Andreas},
	month = jan,
	year = {2002},
	pages = {37--57},
}

@phdthesis{zhang_experibase_2004,
	type = {Thesis},
	title = {{ExperiBase} : an integrated software architecture to support modern experimental biology},
	copyright = {http://dspace.mit.edu/handle/1721.1/7582},
	shorttitle = {{ExperiBase}},
	language = {eng},
	school = {Massachusetts Institute of Technology},
	author = {Zhang, Shixin},
	year = {2004},
	note = {Thesis (Ph. D.)--Massachusetts Institute of Technology, Dept. of Mechanical Engineering, 2004.}
}

@article{dashti_database_1997,
	title = {Database {Challenges} and {Solutions} in {Neuroscientific} {Applications}},
	volume = {5},
	issn = {1053-8119},
	doi = {10.1006/nimg.1996.0253},
	number = {2},
	journal = {NeuroImage},
	author = {Dashti, Ali E. and Ghandeharizadeh, Shahram and Stone, James and Swanson, Larry W. and Thompson, Richard H.},
	month = feb,
	year = {1997},
	pages = {97--115},
}

@inproceedings{ma_godiva:_2004,
	title = {{GODIVA}: lightweight data management for scientific visualization applications},
	shorttitle = {{GODIVA}},
	doi = {10.1109/ICDE.2004.1320041},
	booktitle = {20th {International} {Conference} on {Data} {Engineering}, 2004. {Proceedings}},
	author = {Ma, Xiaosong and Winslett, M. and Norris, J. and Jiao, Xiangmin and Fiedler, R.},
	month = mar,
	year = {2004},
	pages = {732--743},
}

@article{goddard_axiope_2003,
	title = {Axiope tools for data management and data sharing},
	volume = {1},
	issn = {1539-2791, 1559-0089},
	doi = {10.1385/NI:1:3:271},
	language = {en},
	number = {3},
	journal = {Neuroinformatics},
	author = {Goddard, Nigel H. and Cannon, Robert C. and Howell, Fred W.},
	month = sep,
	year = {2003},
	pages = {271--284},
}