Merge pull request #83 from kabilar/main

Fix for `spike_depths` attribute

Author: sidhulyalkar

CHANGELOG.md

@@ -3,6 +3,10 @@
 Observes [Semantic Versioning](https://semver.org/spec/v2.0.0.html) standard and
  [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) convention.
 
+## [0.1.4] - 2022-07-11
+
++ Bugfix - Handle case where `spike_depths` data is present.
+
 ## [0.1.3] - 2022-06-16
 
 + Update - Allow for the `precluster_output_dir` attribute to be nullable when no pre-clustering is performed.
@@ -35,7 +39,10 @@ Observes [Semantic Versioning](https://semver.org/spec/v2.0.0.html) standard and
 + Add - Readers for: `SpikeGLX`, `Open Ephys`, `Kilosort`
 + Add - Probe table supporting: Neuropixels probes 1.0 - 3A, 1.0 - 3B, 2.0 - SS, 2.0 - MS
 
-[0.1.1]: https://github.com/datajoint/element-array-ephys/compare/0.1.0...0.1.1
+[0.1.4]: https://github.com/datajoint/element-array-ephys/releases/tag/0.1.4
+[0.1.3]: https://github.com/datajoint/element-array-ephys/releases/tag/0.1.3
+[0.1.2]: https://github.com/datajoint/element-array-ephys/releases/tag/0.1.2
+[0.1.1]: https://github.com/datajoint/element-array-ephys/releases/tag/0.1.1
 [0.1.0]: https://github.com/datajoint/element-array-ephys/compare/0.1.0b0...0.1.0
-[0.1.0b0]: https://github.com/datajoint/element-array-ephys/compare/0.1.0a5...0.1.0b0
+[0.1.0b0]: https://github.com/datajoint/element-array-ephys/releases/tag/0.1.0b0
 [0.1.0a5]: https://github.com/datajoint/element-array-ephys/releases/tag/0.1.0a5

element_array_ephys/ephys_acute.py

@@ -551,7 +551,7 @@ def make(self, key):
                     'spike_times': unit_spike_times,
                     'spike_count': spike_count,
                     'spike_sites': spike_sites[kilosort_dataset.data['spike_clusters'] == unit],
-                    'spike_depths': spike_depths[kilosort_dataset.data['spike_clusters'] == unit] if spike_depths else None})
+                    'spike_depths': spike_depths[kilosort_dataset.data['spike_clusters'] == unit] if spike_depths is not None else None})
 
         self.insert1(key)
         self.Unit.insert([{**key, **u} for u in units])

element_array_ephys/ephys_chronic.py

@@ -550,7 +550,7 @@ def make(self, key):
                     'spike_times': unit_spike_times,
                     'spike_count': spike_count,
                     'spike_sites': spike_sites[kilosort_dataset.data['spike_clusters'] == unit],
-                    'spike_depths': spike_depths[kilosort_dataset.data['spike_clusters'] == unit] if spike_depths else None})
+                    'spike_depths': spike_depths[kilosort_dataset.data['spike_clusters'] == unit] if spike_depths is not None else None})
 
         self.insert1(key)
         self.Unit.insert([{**key, **u} for u in units])

element_array_ephys/ephys_precluster.py

@@ -685,7 +685,7 @@ def make(self, key):
                     'spike_times': unit_spike_times,
                     'spike_count': spike_count,
                     'spike_sites': spike_sites[kilosort_dataset.data['spike_clusters'] == unit],
-                    'spike_depths': spike_depths[kilosort_dataset.data['spike_clusters'] == unit] if spike_depths else None})
+                    'spike_depths': spike_depths[kilosort_dataset.data['spike_clusters'] == unit] if spike_depths is not None else None})
 
         self.insert1(key)
         self.Unit.insert([{**key, **u} for u in units])

element_array_ephys/version.py

@@ -1,2 +1,2 @@
 """Package metadata."""
-__version__ = '0.1.3'
+__version__ = '0.1.4'