Releases: datajoint/element-array-ephys
Releases · datajoint/element-array-ephys
Release 0.2.1
- Add -
build_electrode_layoutsfunction inprobe.pyto compute the electrode layout for all types of probes. - Update - parameterize run_CatGT step from parameters retrieved from
ClusteringParamSettable - Update - clustering step, update duration for "median_subtraction" step
- Bugfix - handles single probe recording in "Neuropix-PXI" format
- Update - safeguard in creating/inserting probe types upon probe activation
- Add - quality control metric dashboard
- Update & fix docstrings
- Update -
ephys_report.UnitLevelReportto addephys.ClusterQualityLabelas a foreign key reference - Add -
.pre-commit-config.yaml
Release 0.2.0
- Add - New schema
ephys_reportto compute and store figures from results - Add - Widget to display figures
- Add - Add
ephys_no_curationand routines to trigger spike-sorting analysis
using Kilosort (2.0, 2.5) - Add - mkdocs for Element Documentation
- Add - New
QualityMetricstable to store clusters' and waveforms' metrics after the spike sorting analysis.
Release 0.1.4
- Bugfix - Handle case where
spike_depthsdata is present.
Release 0.1.3
- Update - Allow for the
precluster_output_dirattribute to be nullable when no pre-clustering is performed.
Release 0.1.2
- Bugfix - Handle case where
pc_features.npydoes not exist.
Release 0.1.1
- Add - Secondary attributes to
PreClusterParamStepstable
Also Includes changes implemented in 0.1.0
- Update - Rename module for acute probe insertions from
ephys.pytoephys_acute.py. - Add - Module for pre-clustering steps (
ephys_precluster.py), which is built off ofephys_acute.py. - Add - Module for chronic probe insertions (
ephys_chronic.py). - Bugfix - Missing
fileTimeSecskey in SpikeGLX meta file. - Update - Move common functions to
element-interfacepackage. - Add - NWB export function
Release 0.1.0b0
Added
- First beta release
Release 0.1.0a5
Added
- Added GitHub Action release process
probeandephyselements- Readers for:
SpikeGLX,Open Ephys,Kilosort - Probe table supporting: Neuropixels probes 1.0 - 3A, 1.0 - 3B, 2.0 - SS, 2.0 - MS
Release 0.1.0a4
Added
- Added GitHub Action release process
probeandephyselements- Readers for:
SpikeGLX,Open Ephys,Kilosort - Probe table supporting: Neuropixels probes 1.0 - 3A, 1.0 - 3B, 2.0 - SS, 2.0 - MS
Release 0.1.0a3
Added
- Added GitHub Action release process
probeandephyselements- Readers for:
SpikeGLX,Open Ephys,Kilosort - Probe table supporting: Neuropixels probes 1.0 - 3A, 1.0 - 3B, 2.0 - SS, 2.0 - MS