diff --git a/.github/ISSUE_TEMPLATE/config.yml b/.github/ISSUE_TEMPLATE/config.yml index b3d197dd..74368549 100644 --- a/.github/ISSUE_TEMPLATE/config.yml +++ b/.github/ISSUE_TEMPLATE/config.yml @@ -1,5 +1,5 @@ blank_issues_enabled: false contact_links: - name: DataJoint Contribution Guideline - url: https://datajoint.com/docs/community/contribute/ + url: https://docs.datajoint.com/about/contribute/ about: Please make sure to review the DataJoint Contribution Guidelines \ No newline at end of file diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index 2bd0f498..61a342d6 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -1,5 +1,5 @@ # Contribution Guidelines This project follows the -[DataJoint Contribution Guidelines](https://datajoint.com/docs/about/contribute/). +[DataJoint Contribution Guidelines](https://docs.datajoint.com/about/contribute/). Please reference the link for more full details. diff --git a/README.md b/README.md index 2b475f3a..88c3361b 100644 --- a/README.md +++ b/README.md @@ -48,7 +48,7 @@ environment and notebooks to learn the pipeline. + [Interactive tutorial on GitHub Codespaces](#interactive-tutorial) -+ [Documentation](https://datajoint.com/docs/elements/element-calcium-imaging) ++ [Documentation](https://docs.datajoint.com/elements/element-calcium-imaging/) ## Support diff --git a/docs/mkdocs.yaml b/docs/mkdocs.yaml index d2859266..87928a7a 100644 --- a/docs/mkdocs.yaml +++ b/docs/mkdocs.yaml @@ -1,7 +1,7 @@ # ---------------------- PROJECT SPECIFIC --------------------------- site_name: DataJoint Documentation -site_url: http://localhost/docs/elements/element-calcium-imaging +site_url: https://docs.datajoint.com/elements/element-calcium-imaging/ repo_url: https://github.com/datajoint/element-calcium-imaging repo_name: datajoint/element-calcium-imaging nav: diff --git a/docs/src/.overrides/partials/nav.html b/docs/src/.overrides/partials/nav.html index 8b179b47..faac796a 100644 --- a/docs/src/.overrides/partials/nav.html +++ b/docs/src/.overrides/partials/nav.html @@ -14,7 +14,7 @@ {#- Add DataJoint home link to navigation header, otherwise unchanged -#} - + ⬅ Home diff --git a/docs/src/pipeline.md b/docs/src/pipeline.md index 6a5f77b5..b55563ed 100644 --- a/docs/src/pipeline.md +++ b/docs/src/pipeline.md @@ -27,7 +27,7 @@ The Element is composed of two main schemas, `scan` and `imaging`. ### `lab` schema -- For further details see the [lab schema API docs](https://datajoint.com/docs/elements/element-lab/latest/api/element_lab/lab/) +- For further details see the [lab schema API docs](https://docs.datajoint.com/elements/element-lab/latest/api/element_lab/lab/) | Table | Description | | --- | --- | @@ -37,7 +37,7 @@ The Element is composed of two main schemas, `scan` and `imaging`. - Although not required, most choose to connect the `Session` table to a `Subject` table. -- For further details see the [subject schema API docs](https://datajoint.com/docs/elements/element-animal/latest/api/element_animal/subject/) +- For further details see the [subject schema API docs](https://docs.datajoint.com/elements/element-animal/latest/api/element_animal/subject/) | Table | Description | | --- | --- | @@ -45,7 +45,7 @@ The Element is composed of two main schemas, `scan` and `imaging`. ### `session` schema -- For further details see the [session schema API docs](https://datajoint.com/docs/elements/element-session/latest/api/element_session/session_with_datetime/) +- For further details see the [session schema API docs](https://docs.datajoint.com/elements/element-session/latest/api/element_session/session_with_datetime/) | Table | Description | | --- | --- | @@ -53,7 +53,7 @@ The Element is composed of two main schemas, `scan` and `imaging`. ### `scan` schema -- For further details see the [scan schema API docs](https://datajoint.com/docs/elements/element-calcium-imaging/latest/api/element_calcium_imaging/scan/) +- For further details see the [scan schema API docs](https://docs.datajoint.com/elements/element-calcium-imaging/latest/api/element_calcium_imaging/scan/) | Table | Description | | --- | --- | @@ -69,7 +69,7 @@ The Element is composed of two main schemas, `scan` and `imaging`. ### `imaging` schema -- For further details see the [imaging schema API docs](https://datajoint.com/docs/elements/element-calcium-imaging/latest/api/element_calcium_imaging/imaging/) +- For further details see the [imaging schema API docs](https://docs.datajoint.com/elements/element-calcium-imaging/latest/api/element_calcium_imaging/imaging/) | Table | Description | | --- | --- | diff --git a/docs/src/tutorials/index.md b/docs/src/tutorials/index.md index 8329add9..80583f5f 100644 --- a/docs/src/tutorials/index.md +++ b/docs/src/tutorials/index.md @@ -11,7 +11,7 @@ + The Element Calcium Imaging described above can be modified for a user's specific experimental requirements and thereby used in active projects. + The GitHub Codespace and Dev Container is configured for tutorials and prototyping. -We recommend users to configure a database specifically for production pipelines. Instructions for a local installation of the integrated development environment with a database can be found on the [User Guide](https://datajoint.com/docs/elements/user-guide/) page. +We recommend users to configure a database specifically for production pipelines. Instructions for a local installation of the integrated development environment with a database can be found on the [User Guide](https://docs.datajoint.com/elements/user-guide/) page. ## Videos