diff --git a/.github/ISSUE_TEMPLATE/config.yml b/.github/ISSUE_TEMPLATE/config.yml index d31fbac..7436854 100644 --- a/.github/ISSUE_TEMPLATE/config.yml +++ b/.github/ISSUE_TEMPLATE/config.yml @@ -1,5 +1,5 @@ blank_issues_enabled: false contact_links: - name: DataJoint Contribution Guideline - url: https://docs.datajoint.org/python/community/02-Contribute.html + url: https://docs.datajoint.com/about/contribute/ about: Please make sure to review the DataJoint Contribution Guidelines \ No newline at end of file diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index 2bd0f49..61a342d 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -1,5 +1,5 @@ # Contribution Guidelines This project follows the -[DataJoint Contribution Guidelines](https://datajoint.com/docs/about/contribute/). +[DataJoint Contribution Guidelines](https://docs.datajoint.com/about/contribute/). Please reference the link for more full details. diff --git a/README.md b/README.md index a22ad6e..f8650a1 100644 --- a/README.md +++ b/README.md @@ -12,7 +12,7 @@ DataJoint Elements collectively standardize and automate data collection and ana ![pipeline](https://raw.githubusercontent.com/datajoint/element-facemap/main/images/pipeline_facemap_inference.svg) -+ We have designed two variations of the pipeline for different use cases. Displayed above is the pipeline for the `facemap_inference` schema. Details on the pipeline for `facial_behavior_estimation` can be found in the [Data Pipeline](https://datajoint.com/docs/elements/element-facemap/latest/pipeline/) ++ We have designed two variations of the pipeline for different use cases. Displayed above is the pipeline for the `facemap_inference` schema. Details on the pipeline for `facial_behavior_estimation` can be found in the [Data Pipeline](https://docs.datajoint.com/elements/element-facemap/latest/pipeline/) ## Getting Started @@ -32,7 +32,7 @@ DataJoint Elements collectively standardize and automate data collection and ana + [Interactive tutorial on GitHub Codespaces](https://github.com/datajoint/element-facemap#interactive-tutorial) -+ [Documentation](https://datajoint.com/docs/elements/element-facemap) ++ [Documentation](https://docs.datajoint.com/elements/element-facemap/) ## Support diff --git a/docs/mkdocs.yaml b/docs/mkdocs.yaml index 715c114..81219df 100644 --- a/docs/mkdocs.yaml +++ b/docs/mkdocs.yaml @@ -1,7 +1,7 @@ # ---------------------- PROJECT SPECIFIC --------------------------- site_name: DataJoint Documentation -site_url: http://localhost/docs/element/element-facemap +site_url: https://docs.datajoint.com/elements/element-facemap/ repo_url: https://github.com/datajoint/element-facemap repo_name: datajoint/element-facemap nav: diff --git a/docs/src/.overrides/partials/nav.html b/docs/src/.overrides/partials/nav.html index 8b179b4..faac796 100644 --- a/docs/src/.overrides/partials/nav.html +++ b/docs/src/.overrides/partials/nav.html @@ -14,7 +14,7 @@ {#- Add DataJoint home link to navigation header, otherwise unchanged -#} - + ⬅ Home diff --git a/docs/src/pipeline.md b/docs/src/pipeline.md index 2f41329..810815e 100644 --- a/docs/src/pipeline.md +++ b/docs/src/pipeline.md @@ -25,7 +25,7 @@ The element is composed of two main schemas, `facial_behavior_estimation` and `f ### `lab` schema -- For further details see the [lab schema API docs](https://datajoint.com/docs/elements/element-lab/latest/api/element_lab/lab/) +- For further details see the [lab schema API docs](https://docs.datajoint.com/elements/element-lab/latest/api/element_lab/lab/) | Table | Description | | --- | --- | @@ -36,7 +36,7 @@ The element is composed of two main schemas, `facial_behavior_estimation` and `f - Although not required, most choose to connect the `Session` table to a `Subject` table. -- For further details see the [subject schema API docs](https://datajoint.com/docs/elements/element-animal/latest/api/element_animal/subject/) +- For further details see the [subject schema API docs](https://docs.datajoint.com/elements/element-animal/latest/api/element_animal/subject/) | Table | Description | | --- | --- | @@ -44,7 +44,7 @@ The element is composed of two main schemas, `facial_behavior_estimation` and `f ### `session` schema -- For further details see the [session schema API docs](https://datajoint.com/docs/elements/element-session/latest/api/element_session/session_with_datetime/) +- For further details see the [session schema API docs](https://docs.datajoint.com/elements/element-session/latest/api/element_session/session_with_datetime/) | Table | Description | | --- | --- | @@ -52,7 +52,7 @@ The element is composed of two main schemas, `facial_behavior_estimation` and `f ### `facial_behavior_estimation` schema -- For further details see the [facial_behavior_estimation schema API docs](https://datajoint.com/docs/elements/element-facemap/latest/api/element_facemap/facial_behavior_estimation/) +- For further details see the [facial_behavior_estimation schema API docs](https://docs.datajoint.com/elements/element-facemap/latest/api/element_facemap/facial_behavior_estimation/) | Table | Description | | --- | --- | @@ -68,7 +68,7 @@ The element is composed of two main schemas, `facial_behavior_estimation` and `f ### `facemap_inference` schema -- For further details see the [facemap_inference schema API docs](https://datajoint.com/docs/elements/element-facemap/latest/api/element_facemap/facemap_inference/) +- For further details see the [facemap_inference schema API docs](https://docs.datajoint.com/elements/element-facemap/latest/api/element_facemap/facemap_inference/) | Table | Description | | --- | --- | diff --git a/docs/src/tutorials/index.md b/docs/src/tutorials/index.md index 44103b1..5dc8e4e 100644 --- a/docs/src/tutorials/index.md +++ b/docs/src/tutorials/index.md @@ -10,5 +10,5 @@ + The Element Facemap described above can be modified for a user's specific experimental requirements and thereby used in active projects. + The GitHub Codespace and Dev Container is configured for tutorials and prototyping. -We recommend users to configure a database specifically for production pipelines. Instructions for a local installation of the integrated development environment with a database can be found on the [User Guide](https://datajoint.com/docs/elements/user-guide/) page. +We recommend users to configure a database specifically for production pipelines. Instructions for a local installation of the integrated development environment with a database can be found on the [User Guide](https://docs.datajoint.com/elements/user-guide/) page.