Merge pull request #65 from kushalbakshi/main

Remove external store tables, increment version and CHANGELOG

Author: ttngu207

CHANGELOG.md

@@ -3,6 +3,12 @@
 Observes [Semantic Versioning](https://semver.org/spec/v2.0.0.html) standard and
 [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) convention.
 
+## [0.5.0] - 2024-02-05
+
++ Add - New visualization for plotting ROI masks over motion-corrected summary images
++ Remove - `Curation` table from `miniscope.py`
++ Update - `CaImAn` installation management
+
 ## [0.4.2] - 2024-01-29
 
 + Fix - `element-interface` required during package installation
@@ -68,6 +74,7 @@ Observes [Semantic Versioning](https://semver.org/spec/v2.0.0.html) standard and
 + Add - Load data acquired with Miniscope-DAQ-V3
 + Add - Load data analyzed with MiniscopeAnalysis
 
+[0.5.0]: https://github.com/datajoint/element-miniscope/releases/tag/0.5.0
 [0.4.0]: https://github.com/datajoint/element-miniscope/releases/tag/0.4.0
 [0.3.2]: https://github.com/datajoint/element-miniscope/releases/tag/0.3.2
 [0.3.1]: https://github.com/datajoint/element-miniscope/releases/tag/0.3.1

element_miniscope/miniscope.py

@@ -640,14 +640,6 @@ class Processing(dj.Computed):
     package_version=''  : varchar(16)
     """
 
-    class File(dj.Part):
-        definition = """
-        -> master
-        file_name: varchar(255)     # file name
-        ---
-        file: filepath@miniscope-processed
-        """
-
     def make(self, key):
         """
         Execute the miniscope analysis defined by the ProcessingTask.
@@ -726,18 +718,6 @@ def make(self, key):
             raise ValueError(f"Unknown task mode: {task_mode}")
 
         self.insert1(key)
-        self.File.insert(
-            [
-                {
-                    **key,
-                    "file_name": f.relative_to(output_dir).as_posix(),
-                    "file": f,
-                }
-                for f in output_dir.rglob("*")
-                if f.is_file()
-            ],
-            ignore_extra_fields=True,
-        )
 
 
 # Motion Correction --------------------------------------------------------------------

element_miniscope/version.py

@@ -1,3 +1,3 @@
 """Package metadata"""
 
-__version__ = "0.4.2"
+__version__ = "0.5.0"