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Copy file name to clipboardExpand all lines: docs/src/pipeline.md
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### `reference` schema
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+ For further details see the [reference schema API docs](https://datajoint.com/docs/elements/element-miniscope/latest/api/workflow_miniscope/reference/)
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+ For further details see the [reference schema API docs](https://docs.datajoint.com/elements/element-miniscope/0.3/api/workflow_miniscope/reference/)
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| Table | Description |
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| --- | --- |
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+ Although not required, most choose to connect the `Session` table to a `Subject` table.
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+ For further details see the [subject schema API docs](https://datajoint.com/docs/elements/element-animal/api/element_animal/subject/)
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+ For further details see the [subject schema API docs](https://docs.datajoint.com/elements/element-animal/latest/api/element_animal/subject/)
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| Table | Description |
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| --- | --- |
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| Subject | Basic information of the research subject. |
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### `session` schema
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+ For further details see the [session schema API docs](https://datajoint.com/docs/elements/element-session/latest/api/element_session/session_with_datetime/)
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+ For further details see the [session schema API docs](https://docs.datajoint.com/elements/element-session/latest/api/element_session/session_with_datetime/)
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| Table | Description |
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| --- | --- |
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+ Tables related to importing and analyzing miniscope data.
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+ For further details see the [miniscope schema API docs](https://datajoint.com/docs/elements/element-miniscope/latest/api/element_miniscope/miniscope)
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| Table | Description |
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| --- | --- |
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| AcquisitionSoftware | Software used for miniscope acquisition |
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+ Tables that provide summary reports of the processed miniscope data.
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+ For further details see the [miniscope_report API docs](https://datajoint.com/docs/elements/element-miniscope/latest/api/element_miniscope/miniscope_report)
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| Table | Description |
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| --- | --- |
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| QualityMetrics | A table containing information about CaImAn estimates: </p> + `r_values`: Space correlation </p> + `snr`: Trace SNR </p> + `cnn_preds`: CNN predictions|
Copy file name to clipboardExpand all lines: docs/src/tutorials/index.md
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+ The Workflow Miniscope described above can be modified for a user's specific experimental requirements and thereby used in active projects.
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+ The GitHub Codespace and Dev Container is configured for tutorials and prototyping.
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We recommend users to configure a database specifically for production pipelines. Instructions for a local installation of the integrated development environment with a database can be found on the [User Guide](https://datajoint.com/docs/elements/user-guide/) page.
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We recommend users to configure a database specifically for production pipelines. Instructions for a local installation of the integrated development environment with a database can be found on the [User Guide](https://docs.datajoint.com/elements/user-guide/) page.
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