Merge pull request #16 from MilagrosMarin/main

[WIP] fix(docs): update home URL from `datajoint.com/docs` to `docs.datajoint.com`

Author: corprew

.github/ISSUE_TEMPLATE/config.yml

@@ -1,5 +1,5 @@
 blank_issues_enabled: false
 contact_links:
   - name: DataJoint Contribution Guideline
-    url: https://datajoint.com/docs/community/contribute/
+    url: https://docs.datajoint.com/about/contribute/
     about: Please make sure to review the DataJoint Contribution Guidelines

CONTRIBUTING.md

@@ -1,5 +1,5 @@
 # Contribution Guidelines
 
 This project follows the
-[DataJoint Contribution Guidelines](https://datajoint.com/docs/about/contribute/).
+[DataJoint Contribution Guidelines](https://docs.datajoint.com/about/contribute/).
 Please reference the link for more full details.

README.md

@@ -34,7 +34,7 @@ environment and notebooks to learn the pipeline.
 + [Interactive tutorial on GitHub
   Codespaces](https://github.com/datajoint/element-optogenetics#interactive-tutorial)
 
-+ [Documentation](https://datajoint.com/docs/elements/element-optogenetics)
++ [Documentation](https://docs.datajoint.com/elements/element-optogenetics/)
 
 ## Support
 

docs/mkdocs.yaml

@@ -1,7 +1,7 @@
 # ---------------------- PROJECT SPECIFIC ---------------------------
 
 site_name: DataJoint Documentation
-site_url: http://localhost/docs/elements/element-optogenetics
+site_url: https://docs.datajoint.com/elements/element-optogenetics/
 repo_url: https://github.com/datajoint/element-optogenetics
 repo_name: datajoint/element-optogenetics
 nav:

docs/src/.overrides/partials/nav.html

@@ -14,7 +14,7 @@
         {#-
         Add DataJoint home link to navigation header, otherwise unchanged
         -#}
-        <a href="https://datajoint.com/docs/elements/" title="DataJoint Elements">
+        <a href="https://docs.datajoint.com/elements/" title="DataJoint Elements">
             ⬅ Home
         </a>
     </label>
@@ -30,4 +30,4 @@
         {% include "partials/nav-item.html" %}
         {% endfor %}
     </ul>
-</nav>
+</nav>

docs/src/pipeline.md

@@ -13,7 +13,7 @@ documentation on each table, see the API docs for the respective schemas.
 | --- | --- |
 | Device | Pulse generator device |
 
-## `subject` schema ([API docs](https://datajoint.com/docs/elements/element-animal/latest/api/element_animal/subject/#element_animal.subject.Subject))
+## `subject` schema ([API docs](https://docs.datajoint.com/elements/element-animal/latest/api/element_animal/subject/))
 
 - Although not required, most choose to connect the `Session` table to a `Subject` table.
 
@@ -29,7 +29,7 @@ documentation on each table, see the API docs for the respective schemas.
 | --- | --- |
 | Implantation | Location of an implanted device |
 
-## `session` schema ([API docs](https://datajoint.com/docs/elements/element-session/latest/api/element_session/session_with_id))
+## `session` schema ([API docs](https://docs.datajoint.com/elements/element-session/latest/api/element_session/session_with_id/))
 
 | Table | Description |
 | --- | --- |

docs/src/tutorials/index.md

@@ -11,4 +11,4 @@
 + The Workflow Optogenetics described above can be modified for a user's specific experimental requirements and thereby used in active projects.  
 
 + The GitHub Codespace and Dev Container is configured for tutorials and prototyping.  
-We recommend users to configure a database specifically for production pipelines.  Instructions for a local installation of the integrated development environment with a database can be found on the [User Guide](https://datajoint.com/docs/elements/user-guide/) page.
+We recommend users to configure a database specifically for production pipelines.  Instructions for a local installation of the integrated development environment with a database can be found on the [User Guide](https://docs.datajoint.com/elements/user-guide/) page.

element_optogenetics/version.py

@@ -1,2 +1,3 @@
 """Package metadata"""
+
 __version__ = "0.2.0"

notebooks/tutorial.ipynb

@@ -697,7 +697,9 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "session_key = dict(subject=\"subject1\", session_id=0, session_datetime=\"2023-01-01 00:00:00\")"
+    "session_key = dict(\n",
+    "    subject=\"subject1\", session_id=0, session_datetime=\"2023-01-01 00:00:00\"\n",
+    ")"
    ]
   },
   {