Merge pull request #9 from kabilar/main

Remove `volume_match` schema

Author: kushalbakshi

docs/src/pipeline.md

@@ -1,14 +1,11 @@
 # Data Pipeline
 
-Element ZStack is composed of two main schemas, `volume` and `volume_matching`. Data 
-export to BossDB is handled with a `bossdb` schema and upload utilities.
+Element ZStack is composed of two main schemas, `volume` and `bossdb`. Data 
+export to BossDB is handled with the `bossdb` schema and upload utilities.
 
 - `volume` module - performs segmentation of volumetric microscopic images with 
 `cellpose`.
 
-- `volume_matching` module - performs volume registration to a common space and matches 
-cells across imaging sessions.
-
 - `bossdb` module - uploads data to BossDB, creates a Neuroglancer visualization, and 
 stores the relevant URLs.
 
@@ -56,17 +53,6 @@ more detailed documentation on each table, see the API docs for the respective s
 | Segmentation | The core table that executes a SegmentationTask |
 | Segmentation.Mask | Details of the masks identified from the segmentation |
 
-### `volume_matching` schema ([API docs](https://datajoint.com/docs/elements/element-zstack/latest/api/element_zstack/volume_matching))
-
-| Table | Description |
-| --- | --- |
-| VolumeMatchTask | Defines the volume matching task |
-| VolumeMatchTask.Volume | Defines the volume segmentations that will be registered in the downstream `VolumeMatch` table |
-| VolumeMatch | Executes the volume matching algorithm |
-| VolumeMatch.Transformation | Store the transformation matrix to the common space |
-| VolumeMatch.CommonMask | Store common mask identifier |
-| VolumeMatch.VolumeMask | For the masks in the common space, store the associated mask in the segmented volumes, and the confidence of the volume registration and cell matching |
-
 ### `bossdb` schema ([API docs](https://datajoint.com/docs/elements/element-zstack/latest/api/element_zstack/bossdb))
 
 | Table | Description |

element_zstack/volume_matching.py

@@ -17,14 +17,14 @@
 setup(
     name=pkg_name.replace("_", "-"),
     version=__version__,  # noqa: F821
-    description="DataJoint Element for Volume Registration and Cell Matching",
+    description="DataJoint Element for Volume Segmentation",
     long_description=long_description,
     long_description_content_type="text/markdown",
     author="DataJoint",
     author_email="[email protected]",
     license="MIT",
     url=f'https://github.com/datajoint/{pkg_name.replace("_", "-")}',
-    keywords="neuroscience cell matching volume registration",
+    keywords="neuroscience volume segmentation",
     packages=find_packages(exclude=["contrib", "docs", "tests*"]),
     install_requires=requirements,
 )