diff --git a/.github/ISSUE_TEMPLATE/config.yml b/.github/ISSUE_TEMPLATE/config.yml index b3d197d..7436854 100644 --- a/.github/ISSUE_TEMPLATE/config.yml +++ b/.github/ISSUE_TEMPLATE/config.yml @@ -1,5 +1,5 @@ blank_issues_enabled: false contact_links: - name: DataJoint Contribution Guideline - url: https://datajoint.com/docs/community/contribute/ + url: https://docs.datajoint.com/about/contribute/ about: Please make sure to review the DataJoint Contribution Guidelines \ No newline at end of file diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index 9feb414..e3df627 100755 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -1,5 +1,5 @@ # Contribution Guidelines This project follows the -[DataJoint Contribution Guidelines](https://datajoint.com/docs/about/contribute/). +[DataJoint Contribution Guidelines](https://docs.datajoint.com/about/contribute/). Please reference the link for more details. diff --git a/README.md b/README.md index 470582b..681f462 100644 --- a/README.md +++ b/README.md @@ -32,7 +32,7 @@ also provides a tutorial environment and notebooks to learn the pipeline. + [Interactive tutorial on GitHub Codespaces](#interactive-tutorial) -+ [Documentation](https://datajoint.com/docs/elements/element-zstack) ++ [Documentation](https://docs.datajoint.com/elements/element-zstack/) ## Support diff --git a/docs/mkdocs.yaml b/docs/mkdocs.yaml index beee27c..b0f8e0b 100644 --- a/docs/mkdocs.yaml +++ b/docs/mkdocs.yaml @@ -1,7 +1,7 @@ # ---------------------- PROJECT SPECIFIC --------------------------- site_name: DataJoint Documentation -site_url: http://localhost/docs/elements/element-zstack +site_url: https://docs.datajoint.com/elements/element-zstack/ repo_url: https://github.com/datajoint/element-zstack repo_name: datajoint/element-zstack nav: diff --git a/docs/src/.overrides/partials/nav.html b/docs/src/.overrides/partials/nav.html index fea49d7..faac796 100644 --- a/docs/src/.overrides/partials/nav.html +++ b/docs/src/.overrides/partials/nav.html @@ -14,7 +14,7 @@ {#- Add DataJoint home link to navigation header, otherwise unchanged -#} - + ⬅ Home @@ -30,4 +30,4 @@ {% include "partials/nav-item.html" %} {% endfor %} - + \ No newline at end of file diff --git a/docs/src/pipeline.md b/docs/src/pipeline.md index 1491e18..fbc8273 100644 --- a/docs/src/pipeline.md +++ b/docs/src/pipeline.md @@ -18,13 +18,13 @@ more detailed documentation on each table, see the API docs for the respective s ### `lab` schema -- For further details see the [lab schema API docs](https://datajoint.com/docs/elements/element-lab/latest/api/element_lab/lab/) +- For further details see the [lab schema API docs](https://docs.datajoint.com/elements/element-lab/latest/api/element_lab/lab/) | Table | Description | | --- | --- | | Device | Scanner metadata | -### `subject` schema ([API docs](https://datajoint.com/docs/elements/element-animal/latest/api/element_animal/subject)) +### `subject` schema ([API docs](https://docs.datajoint.com/elements/element-animal/latest/api/element_animal/subject/)) - Although not required, most choose to connect the `Session` table to a `Subject` table. @@ -32,13 +32,13 @@ more detailed documentation on each table, see the API docs for the respective s | --- | --- | | Subject | Basic information of the research subject | -### `session` schema ([API docs](https://datajoint.com/docs/elements/element-session/latest/api/element_session/session_with_datetime)) +### `session` schema ([API docs](https://docs.datajoint.com/elements/element-session/latest/api/element_session/session_with_datetime/)) | Table | Description | | --- | --- | | Session | Unique experimental session identifier | -### `scan` schema ([API docs](https://datajoint.com/docs/elements/element-calcium-imaging/latest/api/element_calcium_imaging/scan)) +### `scan` schema ([API docs](https://docs.datajoint.com/elements/element-calcium-imaging/latest/api/element_calcium_imaging/scan/)) | Table | Description | | --- | --- | diff --git a/docs/src/tutorials/index.md b/docs/src/tutorials/index.md index 79022fa..396ad4d 100644 --- a/docs/src/tutorials/index.md +++ b/docs/src/tutorials/index.md @@ -11,7 +11,7 @@ + The Element Z-stack described above can be modified for a user's specific experimental requirements and thereby used in active projects. + The GitHub Codespace and Dev Container is configured for tutorials and prototyping. -We recommend users to configure a database specifically for production pipelines. Instructions for a local installation of the integrated development environment with a database can be found on the [User Guide](https://datajoint.com/docs/elements/user-guide/) page. +We recommend users to configure a database specifically for production pipelines. Instructions for a local installation of the integrated development environment with a database can be found on the [User Guide](https://docs.datajoint.com/elements/user-guide/) page. ## Example Export to BossDB