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9 | 9 | [](https://pypistats.org/packages/suite2p) |
10 | 10 | [](https://github.com/MouseLand/suite2p/blob/main/LICENSE) |
11 | 11 | [](https://github.com/MouseLand/suite2p/graphs/contributors) |
12 | | -[](https://www.suite2p.org) |
13 | 12 | [](https://github.com/MouseLand/suite2p/) |
14 | 13 | [](https://github.com/MouseLand/suite2p/) |
15 | 14 | [](https://github.com/MouseLand/suite2p/) |
@@ -95,7 +94,7 @@ If you want to download and edit the code, and use that version, |
95 | 94 | 2. Run `conda create --name suite2p python=3.9` |
96 | 95 | 3. To activate this new environment, run `conda activate suite2p` (you will have to activate every time you want to run suite2p) |
97 | 96 | 4. Install the local version of suite2p into this environment in develop mode with the command `pip install -e .[all]` |
98 | | -5. Run tests: `python setup.py test` or `pytest -vs`, this will automatically download the test data into your `suite2p` folder. The test data is split into two parts: test inputs and expected test outputs which will be downloaded in `data/test_inputs` and `data/test_outputs` respectively. The .zip files for these two parts can be downloaded from these links: [test_inputs](https://www.suite2p.org/static/test_data/test_inputs.zip) and [test_outputs](https://www.suite2p.org/static/test_data/test_outputs.zip). |
| 97 | +5. Run tests: `python setup.py test` or `pytest -vs`, this will automatically download the test data into your `suite2p` folder. The test data is split into two parts: test inputs and expected test outputs which will be downloaded in `data/test_inputs` and `data/test_outputs` respectively. The .zip files for these two parts can be downloaded from these links: [test_inputs](https://osf.io/download/67f0087b1ec6658af9b25a70/) and [test_outputs](https://osf.io/download/67f007dba7eb86d7808b8832/). |
99 | 98 |
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100 | 99 | ## Examples |
101 | 100 |
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@@ -123,7 +122,7 @@ Then: |
123 | 122 |
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124 | 123 | ### Using the GUI |
125 | 124 |
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126 | | -<img src="https://www.suite2p.org/static/images/multiselect.gif" width="800" alt="selecting multiple ROIs in suite2p with Ctrl"/> |
| 125 | +<img src="https://github.com/MouseLand/MouseLand.github.io/releases/download/v0.1/multiselect.gif" width="800" alt="selecting multiple ROIs in suite2p with Ctrl"/> |
127 | 126 |
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128 | 127 |
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129 | 128 | The suite2p output goes to a folder called "suite2p" inside your save_path, which by default is the same as the data_path. If you ran suite2p in the GUI, it loads the results automatically. Otherwise, you can load the results with File -> Load results or by dragging and dropping the stat.npy file into the GUI. |
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