Merge branch 'main' of https://github.com/dawnfield-institute/dawn-field-theory

Author: =

foundational/experiments/biology_experiments/evolution-symbolic-collapse/output/meta.yaml

@@ -1,11 +1,12 @@
 schema_version: '2.0'
 directory_name: output
-description: Output files from symbolic collapse evolution experiments; includes result logs, figures, and processed data for biological entropy analysis.
+description: Output files from symbolic collapse evolution experiments; includes result
+  logs, figures, and processed data for biological entropy analysis.
 semantic_scope:
-  - biology
-  - evolution
-  - symbolic collapse
-  - experiment output
+- biology
+- evolution
+- symbolic collapse
+- experiment output
 files: []
 child_directories:
 - sweep_20250718_111841

foundational/experiments/quantum_validation/symbolic_interference/results/interference_test_20250721_121752/meta.yaml

@@ -1,11 +1,12 @@
 schema_version: '2.0'
 directory_name: interference_test_20250721_121752
-description: Results from symbolic quantum interference validation test (2025-07-21); contains raw and processed data, figures, and analysis logs.
+description: Results from symbolic quantum interference validation test (2025-07-21);
+  contains raw and processed data, figures, and analysis logs.
 semantic_scope:
-  - quantum validation
-  - symbolic interference
-  - experiment results
-  - quantum-classical bridge
+- quantum validation
+- symbolic interference
+- experiment results
+- quantum-classical bridge
 files:
 - heatmap_mse.png
 - heatmap_pearson_corr.png

map.yaml

@@ -208,6 +208,7 @@ dawn-field-theory/
             meta.yaml
             tree.nwk
           output/
+            meta.yaml
             sweep_20250718_111841/
               meta.yaml
               sweep_provenance.json
@@ -956,6 +957,7 @@ dawn-field-theory/
             interference_test_20250721_121752/
               heatmap_mse.png
               heatmap_pearson_corr.png
+              meta.yaml
               parameter_sweep_results.csv
               symbolic_vs_quantum_interference_noise0.0_prime1.png
               symbolic_vs_quantum_interference_noise0.0_prime7.png
@@ -2025,20 +2027,32 @@ dawn-field-theory/
     publication_framework_roadmap.md
     xai_scbf_roadmap.md
   todo/
-    cip_domain_upgrade.md
-    kronos.md
     meta.yaml
-    ollama_self_hosted_runner.md
-    prometheus.md
-    quantum_EM.md
     roadmap_draft.md
-    synergy_integration_plan.md
     todolist.md
+    biological/
+      historical_collapse.md
+      meta.yaml
+    infra/
+      auto_llm_infra.md
+      cip_domain_upgrade.md
+      kronos.md
+      meta.yaml
+      ollama_self_hosted_runner.md
     left_for_first_release/
       AIXPreprint_skeleton.md
+      SECPreprint_skeleton.md
       entropy_minimized_architecture.md
       mathmatics_next_steps.md
       meta.yaml
+    sdk/
+      fracton.md
+      meta.yaml
+      prometheus.md
+      synergy_integration_plan.md
+    theory/
+      meta.yaml
+      quantum_EM.md
   tools/
     converter.py
     generate_meta_yamls.py

todo/biological/meta.yaml

@@ -1,11 +1,12 @@
 schema_version: '2.0'
 directory_name: biological
-description: Notes, plans, and data related to biological modeling, experiments, and integration with symbolic field theory.
+description: Notes, plans, and data related to biological modeling, experiments, and
+  integration with symbolic field theory.
 semantic_scope:
-  - biology
-  - modeling
-  - symbolic field theory
-  - integration
+- biology
+- modeling
+- symbolic field theory
+- integration
 files:
 - historical_collapse.md
 child_directories: []

todo/infra/meta.yaml

@@ -1,11 +1,12 @@
 schema_version: '2.0'
 directory_name: infra
-description: Infrastructure plans, scripts, and resources for project automation, deployment, and environment management.
+description: Infrastructure plans, scripts, and resources for project automation,
+  deployment, and environment management.
 semantic_scope:
-  - infrastructure
-  - automation
-  - deployment
-  - environment management
+- infrastructure
+- automation
+- deployment
+- environment management
 files:
 - auto_llm_infra.md
 - cip_domain_upgrade.md

todo/left_for_first_release/meta.yaml

@@ -16,6 +16,7 @@ semantic_scope:
 - release_documentation
 files:
 - AIXPreprint_skeleton.md
+- SECPreprint_skeleton.md
 - entropy_minimized_architecture.md
 - mathmatics_next_steps.md
 child_directories: []

todo/meta.yaml

@@ -12,13 +12,11 @@ semantic_scope:
 - planning
 - project management
 files:
-- cip_domain_upgrade.md
-- kronos.md
-- ollama_self_hosted_runner.md
-- prometheus.md
-- quantum_EM.md
 - roadmap_draft.md
-- synergy_integration_plan.md
 - todolist.md
 child_directories:
+- biological
+- infra
 - left_for_first_release
+- sdk
+- theory

todo/sdk/meta.yaml

@@ -1,12 +1,13 @@
 schema_version: '2.0'
 directory_name: sdk
-description: Software development kit for field-theoretic and bifractal agent systems; includes core modules, utilities, and integration tools.
+description: Software development kit for field-theoretic and bifractal agent systems;
+  includes core modules, utilities, and integration tools.
 semantic_scope:
-  - sdk
-  - field theory
-  - bifractal agents
-  - core modules
-  - integration
+- sdk
+- field theory
+- bifractal agents
+- core modules
+- integration
 files:
 - fracton.md
 - prometheus.md

todo/theory/meta.yaml

@@ -1,12 +1,13 @@
 schema_version: '2.0'
 directory_name: theory
-description: Theoretical notes, drafts, and documents on symbolic entropy, collapse, bifractality, and field computation.
+description: Theoretical notes, drafts, and documents on symbolic entropy, collapse,
+  bifractality, and field computation.
 semantic_scope:
-  - theory
-  - symbolic entropy
-  - collapse
-  - bifractality
-  - field computation
+- theory
+- symbolic entropy
+- collapse
+- bifractality
+- field computation
 files:
 - quantum_EM.md
 child_directories: []