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‎APS_CONFIG.sh‎

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# Copyright (C) 2015 Bekaert David - University of Leeds
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# Email: eedpsb@leeds.ac.uk or davidbekaert.com
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU General Public License as published by
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# the Free Software Foundation; either version 2 of the License, or
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# (at your option) any later version.
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#
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# This program is distributed in the hope that it will be useful,
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# but WITHOUT ANY WARRANTY; without even the implied warranty of
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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# GNU General Public License for more details.
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#
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# You should have received a copy of the GNU General Public License along
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# with this program; if not, write to the Free Software Foundation, Inc.,
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# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
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#
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# Give the correct path to the APS toolbox
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export APS_toolbox="/nfs/see-fs-01_users/eedpsb/software/svn_aps"
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# export PYTHONPATH="${PYTHONPATH}:/nfs/see-fs-01_users/eedpsb/software/svn_aps/python_modules/"
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# full path to the get_modis.py file
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# export get_modis_filepath="/nfs/a1/software/python_packages/oscar-client-python/get_modis.py"
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#####################################
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# shouldn't need to change below here
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#####################################
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case ":${MATLABPATH}:" in
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::) export MATLABPATH="${APS_toolbox}/matlab";;
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*:${APS_toolbox}/matlab:*) : ;;
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*) export MATLABPATH="${APS_toolbox}/matlab:${MATLABPATH}";;
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esac
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export APS_toolbox_scripts="${APS_toolbox}/scripts"
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export APS_toolbox_bin="${APS_toolbox}/bin"
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export PATH="${PATH}:${APS_toolbox_bin}:${PYTHONPATH}"

‎APS_CONFIG.tcsh‎

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# Copyright (C) 2015 Bekaert David - University of Leeds
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# Email: eedpsb@leeds.ac.uk or davidbekaert.com
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU General Public License as published by
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# the Free Software Foundation; either version 2 of the License, or
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# (at your option) any later version.
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#
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# This program is distributed in the hope that it will be useful,
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# but WITHOUT ANY WARRANTY; without even the implied warranty of
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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# GNU General Public License for more details.
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#
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# You should have received a copy of the GNU General Public License along
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# with this program; if not, write to the Free Software Foundation, Inc.,
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# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
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#
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# Give the correct path to the APS toolbox
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setenv APS_toolbox "/Users/dbekaert/Software/svn_aps/trunk/"
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setenv PYTHONPATH "/Users/dbekaert/Software/svn_aps/trunk/python_modules/"
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# full path to the get_modis.py file
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setenv get_modis_filepath "/Users/dbekaert/Software/oscar/get_modis.py"
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setenv get_ecmwf_filepath "/Users/dbekaert/Software/ecmwfapi/api.py"
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# when matlab search for you shell.
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# if not found a default bash shell is used.
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# uncomment the next line and specify your shell when needed.
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setenv MATLAB_SHELL "/bin/csh"
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#####################################
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# shouldn't need to change below here
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#####################################
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if (! ${?MATLABPATH}) then
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setenv MATLABPATH "$APS_toolbox/matlab"
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else if (":${MATLABPATH}:" !~ *":$APS_toolbox/matlab:"*) then
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setenv MATLABPATH "$APS_toolbox/matlab:${MATLABPATH}"
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endif
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setenv APS_toolbox_scripts "$APS_toolbox/scripts"
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setenv APS_toolbox_bin "$APS_toolbox/bin"
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setenv PATH "${PATH}:${APS_toolbox_bin}:${PYTHONPATH}"
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‎CITATION.TXT‎

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When using TRAIN cite as follows:
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Bekaert, D.P.S., Walters, R.J., Wright, T.J., Hooper, A.J., and Parker, D.J. (2015c), Statistical comparison of InSAR tropospheric correction techniques, Remote Sensing of Environment, doi: 10.1016/j.rse.2015.08.035
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You can use the following bibtex entry:
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@article{Bekaert2015c,
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author = "D.P.S. Bekaert and R.J. Walters and T.J. Wright and A.J. Hooper and D.J. Parker",
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title = "Statistical comparison of InSAR tropospheric correction techniques",
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journal = "Remote Sensing of Environment ",
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year = "2015",
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issn = "0034-4257",
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doi = "http://dx.doi.org/10.1016/j.rse.2015.08.035",
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}

‎TOOLBOX_LICENSE‎

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This toolbox is only intended for research and should not be used for commercial purposes. Parts of this toolbox have been modified from other established methods, which should also be cited accordingly.
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You can post your questions to https://groups.google.com/forum/?hl=en#!forum/TRAIN_support
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Any damage or data loss resulting from this toolbox is at your own risk.
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There are a few matlab script for which a copyright liscence is included in the matlab folder.

‎Variable_Tables/readme‎

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This can be the location to put your WRF variable tables.

‎bin/WPS_clean‎

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#!/bin/tcsh -f
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#
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# Copyright (C) 2015 Bekaert David - University of Leeds
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# Email: eedpsb@leeds.ac.uk or davidbekaert.com
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU General Public License as published by
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# the Free Software Foundation; either version 2 of the License, or
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# (at your option) any later version.
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#
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# This program is distributed in the hope that it will be useful,
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# but WITHOUT ANY WARRANTY; without even the implied warranty of
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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# GNU General Public License for more details.
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#
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# You should have received a copy of the GNU General Public License along
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# with this program; if not, write to the Free Software Foundation, Inc.,
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# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
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#
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# datapath
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rm -rf Vtable : > .tmp
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rm -rf FILE:* >> .tmp
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rm -rf PFILE:* >> .tmp
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rm -rf SFC:* >> .tmp
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rm -rf PRESS:* >> .tmp
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rm -rf met_em.d0* >> .tmp
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rm -rf geo*.log >> .tmp
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rm -rf log.* >> .tmp
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rm -rf GRIBFILE.AA* >> .tmp
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rm -rf geo*.nc >> .tmp
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rm -rf metgrid.log >> .tmp

‎bin/WRF_clean‎

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#!/bin/tcsh -f
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#
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# Copyright (C) 2015 Bekaert David - University of Leeds
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# Email: eedpsb@leeds.ac.uk or davidbekaert.com
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU General Public License as published by
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# the Free Software Foundation; either version 2 of the License, or
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# (at your option) any later version.
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#
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# This program is distributed in the hope that it will be useful,
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# but WITHOUT ANY WARRANTY; without even the implied warranty of
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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# GNU General Public License for more details.
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#
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# You should have received a copy of the GNU General Public License along
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# with this program; if not, write to the Free Software Foundation, Inc.,
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# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
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#
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# datapath
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rm -rf met_em.d0*
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rm -rf wrfi* wrfbdy*
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‎bin/get_CFSR.csh‎

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#! /bin/csh -f
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#
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# c-shell script to download selected files from rda.ucar.edu using Wget
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# NOTE: if you want to run under a different shell, make sure you change
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# the 'set' commands according to your shell's syntax
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# after you save the file, don't forget to make it executable
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# i.e. - "chmod 755 <name_of_script>"
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#
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# Experienced Wget Users: add additional command-line flags here
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# Use the -r (--recursive) option with care
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# Do NOT use the -b (--background) option - simultaneous file downloads
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# can cause your data access to be blocked
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set opts = "-N"
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#
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# Replace "xxxxxx" with your password
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# IMPORTANT NOTE: If your password uses a special character that has special
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# meaning to csh, you should escape it with a backslash
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# Example: set passwd = "my\!password"
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# Copyright (C) 2015 Bekaert David - University of Leeds
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# Email: eedpsb@leeds.ac.uk or davidbekaert.com
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# script generated from UCAR webpage
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU General Public License as published by
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# the Free Software Foundation; either version 2 of the License, or
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# (at your option) any later version.
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#
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# This program is distributed in the hope that it will be useful,
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# but WITHOUT ANY WARRANTY; without even the implied warranty of
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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# GNU General Public License for more details.
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#
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# You should have received a copy of the GNU General Public License along
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# with this program; if not, write to the Free Software Foundation, Inc.,
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# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
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#
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if ($#argv != 3) then # DB
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echo "get_GFS.csh passwd email filelist"
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endif
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set passwd = $argv[1]
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set email = $argv[2]
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set filelist = $argv[3]
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set num_chars = `echo "$passwd" |awk '{print length($0)}'`
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if ($num_chars == 0) then
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echo "You need to set your password before you can continue"
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echo " see the documentation in the script"
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exit
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endif
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@ num = 1
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set newpass = ""
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while ($num <= $num_chars)
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set c = `echo "$passwd" |cut -b{$num}-{$num}`
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if ("$c" == "&") then
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set c = "%26";
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else
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if ("$c" == "?") then
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set c = "%3F"
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else
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if ("$c" == "=") then
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set c = "%3D"
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endif
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endif
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endif
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set newpass = "$newpass$c"
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@ num ++
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end
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set passwd = "$newpass"
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#
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set cert_opt = ""
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# If you get a certificate verification error (version 1.10 or higher),
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# uncomment the following line:
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#set cert_opt = "--no-check-certificate"
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#
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# authenticate - NOTE: You should only execute this command ONE TIME.
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# Executing this command for every data file you download may cause
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# your download privileges to be suspended.
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if ("$passwd" == "xxxxxx") then
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echo "You need to set your password before you can continue"
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echo " see the documentation in the script"
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exit
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endif
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wget $cert_opt -O /dev/null --save-cookies auth.rda.ucar.edu --post-data="email=$email&passwd=$passwd&action=login" https://rda.ucar.edu/cgi-bin/login
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#
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# download the file(s)
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foreach file(`cat $filelist`)
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echo $file
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wget $cert_opt $opts --load-cookies auth.rda.ucar.edu http://rda.ucar.edu/data/ds093.0/$file
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end
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#
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# clean up
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#rm auth.rda.ucar.edu
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‎bin/get_GFS.csh‎

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#! /bin/csh -f
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#
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# c-shell script to download selected files from rda.ucar.edu using Wget
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# NOTE: if you want to run under a different shell, make sure you change
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# the 'set' commands according to your shell's syntax
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# after you save the file, don't forget to make it executable
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# i.e. - "chmod 755 <name_of_script>"
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#
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# Experienced Wget Users: add additional command-line flags here
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# Use the -r (--recursive) option with care
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# Do NOT use the -b (--background) option - simultaneous file downloads
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# can cause your data access to be blocked
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set opts = "-N"
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#
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# Replace "xxxxxx" with your password
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# IMPORTANT NOTE: If your password uses a special character that has special
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# meaning to csh, you should escape it with a backslash
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# Example: set passwd = "my\!password"
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#
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# Copyright (C) 2015 Bekaert David - University of Leeds
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# Email: eedpsb@leeds.ac.uk or davidbekaert.com
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# script generated from UCAR webpage
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU General Public License as published by
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# the Free Software Foundation; either version 2 of the License, or
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# (at your option) any later version.
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#
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# This program is distributed in the hope that it will be useful,
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# but WITHOUT ANY WARRANTY; without even the implied warranty of
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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# GNU General Public License for more details.
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#
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# You should have received a copy of the GNU General Public License along
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# with this program; if not, write to the Free Software Foundation, Inc.,
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# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
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#
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if ($#argv != 3) then # DB
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echo "get_GFS.csh passwd email filelist"
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endif
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set passwd = $argv[1]
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set email = $argv[2]
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set filelist = $argv[3]
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set num_chars = `echo "$passwd" |awk '{print length($0)}'`
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if ($num_chars == 0) then
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echo "You need to set your password before you can continue"
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echo " see the documentation in the script"
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exit
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endif
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@ num = 1
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set newpass = ""
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while ($num <= $num_chars)
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set c = `echo "$passwd" |cut -b{$num}-{$num}`
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if ("$c" == "&") then
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set c = "%26";
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else
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if ("$c" == "?") then
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set c = "%3F"
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else
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if ("$c" == "=") then
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set c = "%3D"
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endif
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endif
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endif
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set newpass = "$newpass$c"
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@ num ++
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end
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set passwd = "$newpass"
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#
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set cert_opt = ""
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# If you get a certificate verification error (version 1.10 or higher),
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# uncomment the following line:
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#set cert_opt = "--no-check-certificate"
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#
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# authenticate - NOTE: You should only execute this command ONE TIME.
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# Executing this command for every data file you download may cause
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# your download privileges to be suspended.
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if ("$passwd" == "xxxxxx") then
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echo "You need to set your password before you can continue"
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echo " see the documentation in the script"
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exit
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endif
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wget $cert_opt -O /dev/null --save-cookies auth.rda.ucar.edu --post-data="email=$email&passwd=$passwd&action=login" https://rda.ucar.edu/cgi-bin/login
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#
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# download the file(s)
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foreach file(`cat $filelist`)
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echo $file
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wget $cert_opt $opts --load-cookies auth.rda.ucar.edu http://rda.ucar.edu/data/ds335.0/GFS0p5/$file
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end
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#
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# clean up
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rm auth.rda.ucar.edu
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