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Ensure datalad version > 0.19.3
Without, I encountered a permission problem during `datalad save` Also cleaned up some unfinished work that got merged.
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src/computing/discovery.md

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@@ -6,33 +6,42 @@ This section provides additional, typically DBIC users specific information and
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## Getting Access
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## Tour
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## MUST KNOWs
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- Please be considerate about the nodes you are using. When you login, you
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are on a login-node, but no work should be done here! Instead, use an interactive node `x01`, scheduling node, `s01`, or if you have permission, the fancy IT node `ndoli`.
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- Home dir limited 50gigs for large datasets, use `/dartfs/rc/lab/D/DBIC/DBIC/`
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(TODO, this is just a list for now, to indicate the order that a new
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user will encounter these)
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## Recommended .bashrc
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x01 s01 ndoli
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```
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# .bashrc
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export TERM=xterm
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# Source global definitions
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if [ -f /etc/bashrc ]; then
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. /etc/bashrc
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fi
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home limited 50gigs
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# User specific aliases and functions
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For large datasets, use /dartfs/rc/lab/D/DBIC/DBIC/
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# Install conda
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source /optnfs/common/miniconda3/etc/profile.d/conda.sh
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f0066m7@ndoli chymera]$ ls
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[f0066m7@ndoli chymera]$ echo nfs4_setfacl -a 'A:fd:f0066m7@KIEWIT.DARTMOUTH.E
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nfs4_setfacl -a A:fd:f0066m7@KIEWIT.DARTMOUTH.EDU:rwatcy 1 .
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[f0066m7@ndoli chymera]$ echo nfs4_setfacl -a 'D::[email protected]
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nfs4_setfacl -a D::[email protected]:d 1 .
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[f0066m7@ndoli chymera]$ ls
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[f0066m7@ndoli chymera]$ pwd
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/dartfs/rc/lab/D/DBIC/DBIC/CON/chymera
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[f0066m7@ndoli chymera]$ datalad install -r [email protected]:con/opfvta-replicat
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[INFO ] Cloning [email protected]:c
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# use DBIC-installed git-annex
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# https://dbic-handbook.readthedocs.io/en/latest/mri/dataaccess.html#discovery-filesystem
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ANNEX_BIN_PATH=/dartfs/rc/lab/D/DBIC/DBIC/archive/git-annex/usr/lib/git-annex.linux/
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echo $PATH | grep -q "$ANNEX_BIN_PATH" || export PATH="$ANNEX_BIN_PATH:$PATH"
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export TERM=xterm
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export EDITOR=vim
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alias dog="pygmentize -g"
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```
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## Installing Software
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Make sure `datalad --version` > 0.19.3
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### Containers
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Notes for why and how to use containers on Discovery can be found in the

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