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‎.devcontainer/1-minimal/devcontainer.json‎

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{
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"image": "docker.io/ubuntu:22.04"
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}

‎.devcontainer/2-matlab/Dockerfile‎

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FROM docker.io/mathworks/matlab:r2024b
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RUN sudo apt-get update && sudo apt-get install git -y
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RUN pipx upgrade matlab-proxy && \
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pipx inject --include-apps --include-deps \
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matlab-proxy jupyter-matlab-proxy jupyterlab

‎.devcontainer/2-matlab/devcontainer.json‎

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{
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"dockerFile": "Dockerfile",
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"runArgs": ["--shm-size=512M"], // shared memory required for MATLAB
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"forwardPorts": [8888],
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"portsAttributes": {
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"8888": { "label": "MATLAB" }
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},
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"postStartCommand": "nohup bash -c 'run.sh -browser &' > /dev/null 2>&1"
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}

‎.devcontainer/3-jupyter/Dockerfile‎

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FROM quay.io/jupyter/datascience-notebook:r-4.3.3
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USER root
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### RStudio system dependencies
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RUN apt-get update && \
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apt-get install -y --no-install-recommends \
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lmodern psmisc lsb-release libssl-dev libclang-dev libpq5 libtiff-dev && \
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apt-get clean -y && \
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rm -rf /var/lib/apt/lists/* /tmp/library-scripts
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### install RStudio server
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ARG RSTUDIO_VER="2023.12.1-402"
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ARG RSTUDIO_URL="https://download2.rstudio.org/server/jammy/amd64"
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RUN wget -q "${RSTUDIO_URL}/rstudio-server-${RSTUDIO_VER}-amd64.deb" && \
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apt-get install -yq --no-install-recommends ./rstudio*.deb && \
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rm -f ./rstudio*.deb && \
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apt-get clean && \
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chmod 777 /var/run/rstudio-server && \
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chmod +t /var/run/rstudio-server
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USER ${NB_USER}
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### RStudio launch button in JupyterLab
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RUN mamba install -y -c conda-forge --freeze-installed \
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jupyter-rsession-proxy=2.2.0 && \
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mamba clean --all
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### Enhanced R terminal
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RUN pip install radian==0.6.11
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### Additional editing and debugging tools for VS Code R development
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RUN echo 'options(repos=c(CRAN="https://cloud.r-project.org"))' > ~/.Rprofile && \
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R -q -e 'remotes::install_version("markdown", version="1.12")' && \
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R -q -e 'remotes::install_version("languageserver", version="0.3.16")' && \
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R -q -e 'remotes::install_version("httpgd", version="2.0.1")' && \
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R -q -e 'remotes::install_github("ManuelHentschel/vscDebugger")'

‎.devcontainer/3-jupyter/devcontainer.json‎

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{
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"dockerFile": "Dockerfile",
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"runArgs": ["--workdir=/workspaces/container-computing"],
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"overrideCommand": false, // Lets JupyterLab server to run
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"forwardPorts": [8888],
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"portsAttributes": {
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"8888": { "label": "JupyterLab" }
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},
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"customizations": {
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"vscode": {
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"settings": {
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"python.defaultInterpreterPath": "/opt/conda/bin/python",
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"r.rterm.linux": "/opt/conda/bin/radian",
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"r.bracketedPaste": true,
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"r.plot.useHttpgd": true
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},
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"extensions": ["reditorsupport.r", "RDebugger.r-debugger"]
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}
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}
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}

‎.devcontainer/4-gpu/Dockerfile‎

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FROM quay.io/jupyter/pytorch-notebook:cuda12-python-3.12.8
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USER root
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### System packages
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RUN apt-get update && \
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apt-get install -y --no-install-recommends \
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lmodern file curl g++ tmux && \
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apt-get clean -y && \
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rm -rf /var/lib/apt/lists/* /tmp/library-scripts
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USER ${NB_USER}
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### GitHub CLI Installation
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ENV GH_CLI_VER "2.30.0"
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ENV GH_CLI_URL "https://github.com/cli/cli/releases/download"
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RUN wget -O - \
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${GH_CLI_URL}/v${GH_CLI_VER}/gh_${GH_CLI_VER}_linux_amd64.tar.gz | \
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tar xvzf - -C /opt/conda/bin gh_${GH_CLI_VER}_linux_amd64/bin/gh \
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--strip-components=2
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### Prints Jupyter server token when terminal is opened
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RUN echo "echo \"Jupyter server token: \$(jupyter server list 2>&1 | grep -oP '(?<=token=)[[:alnum:]]*')\"" > ${HOME}/.get-jupyter-url.sh && \
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echo "sh \${HOME}/.get-jupyter-url.sh" >> ${HOME}/.bashrc

‎.devcontainer/4-gpu/devcontainer.json‎

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{
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"dockerFile": "Dockerfile",
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"workspaceMount": "source=${localWorkspaceFolder},target=/home/jovyan/work,type=bind",
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"workspaceFolder": "/home/jovyan/work",
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"overrideCommand": false,
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"forwardPorts": [8888],
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"runArgs": [
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"--runtime=nvidia", // "--runtime=amd"
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"--gpus=all" // "--gpus='device=1,2'"
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],
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"customizations": {
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"vscode": {
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"settings": {
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"python.defaultInterpreterPath": "/opt/conda/bin/python"
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},
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"extensions": [
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"ms-python.python", // for Python
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"ms-toolsai.jupyter", // for Python
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"ms-toolsai.jupyter-keymap", // for Python
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"ms-vscode.live-server",
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"analytic-signal.preview-pdf"
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]
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}
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}
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}

‎.devcontainer/5-gui/Dockerfile‎

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FROM docker.io/ubuntu:22.04
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# git package installation
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RUN apt-get update && \
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apt-get install -y git g++

‎.devcontainer/5-gui/devcontainer.json‎

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{
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"dockerFile": "Dockerfile",
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"containerEnv": { "TMPDIR": "/tmp" },
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"forwardPorts": [6080],
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"features": {
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"ghcr.io/devcontainers/features/desktop-lite:1": {
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"version": "latest",
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"noVncVersion": "1.2.0",
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"password": "noPassword",
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"webPort": "6080"
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}
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}
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}

‎.devcontainer/Dockerfile‎

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FROM quay.io/jupyter/datascience-notebook:r-4.3.3
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USER root
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### RStudio system dependencies
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RUN apt-get update && \
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apt-get install -y --no-install-recommends \
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lmodern psmisc lsb-release libssl-dev \
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libclang-dev libpq5 libtiff-dev \
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&& \
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apt-get clean -y && \
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rm -rf /var/lib/apt/lists/* /tmp/library-scripts
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### RStudio server
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ARG RSTUDIO_VER=2023.12.1-402
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ARG RSTUDIO_URL=https://download2.rstudio.org/server/jammy/amd64
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RUN wget -q ${RSTUDIO_URL}/rstudio-server-${RSTUDIO_VER}-amd64.deb && \
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apt-get install -yq --no-install-recommends ./rstudio*.deb && \
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rm -f ./rstudio*.deb && \
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apt-get clean && \
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chmod 777 /var/run/rstudio-server && \
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chmod +t /var/run/rstudio-server
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USER ${NB_USER}
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### RStudio launch button in JupyterLab
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RUN mamba install -y -c conda-forge --freeze-installed \
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jupyter-rsession-proxy=2.2.0 && \
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mamba clean --all
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### Enhanced R terminal
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RUN pip install \
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radian==0.6.11
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### Additional editing and debugging tools for VS Code R development
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RUN R -q -e 'remotes::install_version("markdown", version="1.12", repos="cloud.r-project.org")' && \
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R -q -e 'remotes::install_version("languageserver", version="0.3.16", repos="cloud.r-project.org")' && \
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R -q -e 'remotes::install_version("httpgd", version="2.0.1", repos="cloud.r-project.org")' && \
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R -q -e 'remotes::install_github("ManuelHentschel/vscDebugger")' && \
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echo
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### Prints Jupyter server token when terminal is opened
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RUN echo "echo \"Jupyter server token: \$(jupyter server list 2>&1 | grep -oP '(?<=token=)[[:alnum:]]*')\"" > ${HOME}/.get-token.sh && \
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echo "sh \${HOME}/.get-token.sh" >> ${HOME}/.bashrc

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