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lines changed Original file line number Diff line number Diff line change @@ -158,7 +158,7 @@ rule merge_raw_cells:
158158 raw_unique_matrix = temp (SOLO_ROOT / get_gene_model () / "raw" / "matrix.mtx" ),
159159 raw_em_matrix = temp (SOLO_ROOT / get_gene_model () / "raw" / "UniqueAndMult-EM.mtx" ),
160160 resources :
161- mem_mb = DEFAULT_MEM_MB
161+ mem_mb = 8192
162162 threads : 1
163163 run :
164164 from woldrnaseq .splitseq_merger import write_merged_splitseq_matrix
@@ -177,7 +177,7 @@ rule merge_sj_cells:
177177 sj_features = temp (SOLO_ROOT / "SJ" / "raw" / "features.tsv" ),
178178 sj_matrix = temp (SOLO_ROOT / "SJ" / "raw" / "matrix.mtx" ),
179179 resources :
180- mem_mb = DEFAULT_MEM_MB
180+ mem_mb = 8192
181181 threads : 1
182182 run :
183183 from woldrnaseq .splitseq_merger import write_merged_splitseq_matrix
@@ -199,7 +199,7 @@ rule filter_merged_unique_cells:
199199 output_directory = lambda wildcards , output : Path (output .filtered_unique_matrix ).parent ,
200200 star_tmp = temp (directory ("_STARtmp" )),
201201 resources :
202- mem_mb = DEFAULT_MEM_MB
202+ mem_mb = 8192
203203 threads : 1
204204 log : "filter_merged_unique_cells.out"
205205 singularity :
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