first_go_using_anchors_WBM
EXP2clusterIDS_vs_cellIDS_heatmap.png
NAMED_heatmap_cells_within_clusters.png
NAMED_heatmap_cells_within_states.png
NAMED_umap_projection_split_by_state.png
clusterIDS_vs_cellIDS_heatmap.png
exp1_umap_split_by_state.tiff
go_term_plot_MK_down_reg.tiff
heatmap_cells_within_clusters.png
heatmap_cells_within_states.png
umap_projection_split_by_state.png
EXP2_compare_SingleR_cell_vs_clst.R
Findings on the Unknown Labeled Cells.docx
HTO_only_demultiplex_Dr Brian.R
LiJun_HannumF_2020_agreement.pdf
SeuratVignette_clustering.R
Seurat_cluster_filtering.R
UMAP Projection for Annotation.pdf
figure3_followup_w_fig4_eda.Rmd
figure3_followup_w_fig4_eda.html
figure_generation_v2.html
figure_generation_v2_MK_subclustering.Rmd
figure_generation_v2_MK_subclustering.html
figure_generation_v5.html
finding_marker_genes_from_ref.R
gran.cluster.deep.dive.Rmd
gran.cluster.deep.dive.html
integrating_with_hwbm_to_check_labels.Rmd
integrating_with_hwbm_to_check_labels.html
marker_gene_expression_with_sets.Rmd
marker_gene_expression_with_sets.html
mep_introspection_new_variable_genes.Rmd
mep_introspection_new_variable_genes.html
priya_presentation_0730.Rmd
priya_presentation_0730.html
scWBM_DEG_other_clusters.Rmd
scWBM_DEG_other_clusters.html
umap_projection_for_hand_labeling.R
v2.1.2.Analysis.of.Subsetting.Cells.Rmd
v2.1.2.Analysis.of.Subsetting.Cells.html
v2.1.3.cluster.centroids.Rmd
v2.1.3.cluster.centroids.html
v2.1.Integration.UMAP.Rmd
v2.1.Integration.UMAP.html
v2.2.3.Labeling.Nbeal.Rmd
v2.2.3.Labeling.Nbeal.html
v2.2.pt2.Labling.cont.Rmd
v2.2.pt2.Labling.cont.html
v2.5.MEP.Introspection.Rmd
v2.5.MEP.Introspection.html
v3.Write.Up.MEP.subset.Rmd
v5.CanJustUseIntegrated....Rmd
wbm_exp_with_unknown_Seurat.R
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