htdocs update (master)

Author: DiamondLightSource-build-server

documentation/tutorials/mpro_x0692.html

@@ -1729,11 +1729,11 @@ <h3>Integration<a class="headerlink" href="#integration" title="Link to this hea
 <span class="linenos"> 123</span> Split 26 reflections overlapping job boundaries
 <span class="linenos"> 124</span>
 <span class="linenos"> 125</span>Memory situation report:
-<span class="linenos"> 126</span>  Available system memory                           : 127295.2 MB
-<span class="linenos"> 127</span>  Maximum memory for processing                     : 101836.2 MB
-<span class="linenos"> 128</span>  Current memory usage                              : 313.1 MB
+<span class="linenos"> 126</span>  Available system memory                           : 127283.9 MB
+<span class="linenos"> 127</span>  Maximum memory for processing                     : 101827.1 MB
+<span class="linenos"> 128</span>  Current memory usage                              : 312.7 MB
 <span class="linenos"> 129</span>  Memory required for shoeboxes                     :  16.8 MB
-<span class="linenos"> 130</span>  Memory required per process                       : 329.9 MB
+<span class="linenos"> 130</span>  Memory required per process                       : 329.5 MB
 <span class="linenos"> 131</span>
 <span class="linenos"> 132</span>Processing reflections in the following blocks of images:
 <span class="linenos"> 133</span>
@@ -2156,12 +2156,12 @@ <h3>Integration<a class="headerlink" href="#integration" title="Link to this hea
 <span class="linenos"> 550</span>
 <span class="linenos"> 551</span>Timing information for reference profile formation
 <span class="linenos"> 552</span>+-------------------+---------------+
-<span class="linenos"> 553</span>| Read time         | 21.12 seconds |
-<span class="linenos"> 554</span>| Extract time      | 0.35 seconds  |
-<span class="linenos"> 555</span>| Pre-process time  | 0.02 seconds  |
-<span class="linenos"> 556</span>| Process time      | 9.51 seconds  |
+<span class="linenos"> 553</span>| Read time         | 24.59 seconds |
+<span class="linenos"> 554</span>| Extract time      | 0.42 seconds  |
+<span class="linenos"> 555</span>| Pre-process time  | 0.03 seconds  |
+<span class="linenos"> 556</span>| Process time      | 9.54 seconds  |
 <span class="linenos"> 557</span>| Post-process time | 0.00 seconds  |
-<span class="linenos"> 558</span>| Total time        | 31.01 seconds |
+<span class="linenos"> 558</span>| Total time        | 34.77 seconds |
 <span class="linenos"> 559</span>+-------------------+---------------+
 <span class="linenos"> 560</span>
 <span class="linenos"> 561</span>================================================================================
@@ -2171,11 +2171,11 @@ <h3>Integration<a class="headerlink" href="#integration" title="Link to this hea
 <span class="linenos"> 565</span> Split 668 reflections overlapping job boundaries
 <span class="linenos"> 566</span>
 <span class="linenos"> 567</span>Memory situation report:
-<span class="linenos"> 568</span>  Available system memory                           : 127295.2 MB
-<span class="linenos"> 569</span>  Maximum memory for processing                     : 101836.2 MB
-<span class="linenos"> 570</span>  Current memory usage                              : 344.3 MB
+<span class="linenos"> 568</span>  Available system memory                           : 127283.9 MB
+<span class="linenos"> 569</span>  Maximum memory for processing                     : 101827.1 MB
+<span class="linenos"> 570</span>  Current memory usage                              : 343.0 MB
 <span class="linenos"> 571</span>  Memory required for shoeboxes                     : 252.3 MB
-<span class="linenos"> 572</span>  Memory required per process                       : 596.6 MB
+<span class="linenos"> 572</span>  Memory required per process                       : 595.3 MB
 <span class="linenos"> 573</span>
 <span class="linenos"> 574</span>Processing reflections in the following blocks of images:
 <span class="linenos"> 575</span>
@@ -2694,12 +2694,12 @@ <h3>Integration<a class="headerlink" href="#integration" title="Link to this hea
 <span class="linenos">1088</span>
 <span class="linenos">1089</span>Timing information for integration
 <span class="linenos">1090</span>+-------------------+----------------+
-<span class="linenos">1091</span>| Read time         | 23.43 seconds  |
-<span class="linenos">1092</span>| Extract time      | 5.17 seconds   |
-<span class="linenos">1093</span>| Pre-process time  | 0.28 seconds   |
-<span class="linenos">1094</span>| Process time      | 138.21 seconds |
+<span class="linenos">1091</span>| Read time         | 23.08 seconds  |
+<span class="linenos">1092</span>| Extract time      | 5.95 seconds   |
+<span class="linenos">1093</span>| Pre-process time  | 0.29 seconds   |
+<span class="linenos">1094</span>| Process time      | 141.31 seconds |
 <span class="linenos">1095</span>| Post-process time | 0.00 seconds   |
-<span class="linenos">1096</span>| Total time        | 168.06 seconds |
+<span class="linenos">1096</span>| Total time        | 171.66 seconds |
 <span class="linenos">1097</span>+-------------------+----------------+
 <span class="linenos">1098</span>
 <span class="linenos">1099</span>Removing 22809 unintegrated reflections of 199349 total
@@ -3122,7 +3122,7 @@ <h3>Scaling and Merging<a class="headerlink" href="#scaling-and-merging" title="
 <span class="linenos">199</span>Components to be refined in this cycle for all datasets: scale, decay, absorption
 <span class="linenos">200</span>Performing a round of scaling with a Levenberg-Marquardt minimizer.
 <span class="linenos">201</span>
-<span class="linenos">202</span>Time taken for refinement 4.03
+<span class="linenos">202</span>Time taken for refinement 4.46
 <span class="linenos">203</span>
 <span class="linenos">204</span>Refinement steps:
 <span class="linenos">205</span>+--------+--------+----------+
@@ -3146,7 +3146,7 @@ <h3>Scaling and Merging<a class="headerlink" href="#scaling-and-merging" title="
 <span class="linenos">223</span>Components to be refined in this cycle for all datasets: scale, decay, absorption
 <span class="linenos">224</span>Performing a round of scaling with a Levenberg-Marquardt minimizer.
 <span class="linenos">225</span>
-<span class="linenos">226</span>Time taken for refinement 0.85
+<span class="linenos">226</span>Time taken for refinement 0.91
 <span class="linenos">227</span>
 <span class="linenos">228</span>Refinement steps:
 <span class="linenos">229</span>+--------+--------+----------+
@@ -3196,7 +3196,7 @@ <h3>Scaling and Merging<a class="headerlink" href="#scaling-and-merging" title="
 <span class="linenos">273</span>The reflection table variances have been adjusted to account for the
 <span class="linenos">274</span>uncertainty in the scaling model
 <span class="linenos">275</span>
-<span class="linenos">276</span>Total time taken: 18.5170s 
+<span class="linenos">276</span>Total time taken: 19.2973s 
 <span class="linenos">277</span>
 <span class="linenos">278</span>================================================================================
 <span class="linenos">279</span>

documentation/tutorials/processing_in_detail_betalactamase.html

@@ -2008,8 +2008,8 @@ <h3>Integration<a class="headerlink" href="#integration" title="Link to this hea
 <span class="linenos"> 128</span> Split 13 reflections overlapping job boundaries
 <span class="linenos"> 129</span>
 <span class="linenos"> 130</span>Memory situation report:
-<span class="linenos"> 131</span>  Available system memory                           : 127308.5 MB
-<span class="linenos"> 132</span>  Maximum memory for processing                     : 101846.8 MB
+<span class="linenos"> 131</span>  Available system memory                           : 127273.5 MB
+<span class="linenos"> 132</span>  Maximum memory for processing                     : 101818.8 MB
 <span class="linenos"> 133</span>  Current memory usage                              : 517.4 MB
 <span class="linenos"> 134</span>  Memory required for shoeboxes                     :   2.7 MB
 <span class="linenos"> 135</span>  Memory required per process                       : 520.1 MB
@@ -2723,12 +2723,12 @@ <h3>Integration<a class="headerlink" href="#integration" title="Link to this hea
 <span class="linenos"> 843</span>
 <span class="linenos"> 844</span>Timing information for reference profile formation
 <span class="linenos"> 845</span>+-------------------+---------------+
-<span class="linenos"> 846</span>| Read time         | 60.45 seconds |
-<span class="linenos"> 847</span>| Extract time      | 0.48 seconds  |
-<span class="linenos"> 848</span>| Pre-process time  | 0.12 seconds  |
-<span class="linenos"> 849</span>| Process time      | 29.01 seconds |
+<span class="linenos"> 846</span>| Read time         | 60.66 seconds |
+<span class="linenos"> 847</span>| Extract time      | 0.43 seconds  |
+<span class="linenos"> 848</span>| Pre-process time  | 0.13 seconds  |
+<span class="linenos"> 849</span>| Process time      | 29.37 seconds |
 <span class="linenos"> 850</span>| Post-process time | 0.00 seconds  |
-<span class="linenos"> 851</span>| Total time        | 90.32 seconds |
+<span class="linenos"> 851</span>| Total time        | 90.77 seconds |
 <span class="linenos"> 852</span>+-------------------+---------------+
 <span class="linenos"> 853</span>
 <span class="linenos"> 854</span>================================================================================
@@ -2738,11 +2738,11 @@ <h3>Integration<a class="headerlink" href="#integration" title="Link to this hea
 <span class="linenos"> 858</span> Split 112 reflections overlapping job boundaries
 <span class="linenos"> 859</span>
 <span class="linenos"> 860</span>Memory situation report:
-<span class="linenos"> 861</span>  Available system memory                           : 127308.5 MB
-<span class="linenos"> 862</span>  Maximum memory for processing                     : 101846.8 MB
-<span class="linenos"> 863</span>  Current memory usage                              : 529.6 MB
+<span class="linenos"> 861</span>  Available system memory                           : 127273.5 MB
+<span class="linenos"> 862</span>  Maximum memory for processing                     : 101818.8 MB
+<span class="linenos"> 863</span>  Current memory usage                              : 526.6 MB
 <span class="linenos"> 864</span>  Memory required for shoeboxes                     :  14.5 MB
-<span class="linenos"> 865</span>  Memory required per process                       : 544.1 MB
+<span class="linenos"> 865</span>  Memory required per process                       : 541.1 MB
 <span class="linenos"> 866</span>
 <span class="linenos"> 867</span>Processing reflections in the following blocks of images:
 <span class="linenos"> 868</span>
@@ -3581,12 +3581,12 @@ <h3>Integration<a class="headerlink" href="#integration" title="Link to this hea
 <span class="linenos">1701</span>
 <span class="linenos">1702</span>Timing information for integration
 <span class="linenos">1703</span>+-------------------+----------------+
-<span class="linenos">1704</span>| Read time         | 53.20 seconds  |
-<span class="linenos">1705</span>| Extract time      | 2.19 seconds   |
-<span class="linenos">1706</span>| Pre-process time  | 0.50 seconds   |
-<span class="linenos">1707</span>| Process time      | 148.36 seconds |
+<span class="linenos">1704</span>| Read time         | 54.11 seconds  |
+<span class="linenos">1705</span>| Extract time      | 2.16 seconds   |
+<span class="linenos">1706</span>| Pre-process time  | 0.48 seconds   |
+<span class="linenos">1707</span>| Process time      | 147.82 seconds |
 <span class="linenos">1708</span>| Post-process time | 0.00 seconds   |
-<span class="linenos">1709</span>| Total time        | 205.22 seconds |
+<span class="linenos">1709</span>| Total time        | 205.77 seconds |
 <span class="linenos">1710</span>+-------------------+----------------+
 <span class="linenos">1711</span>
 <span class="linenos">1712</span>Removing 41640 unintegrated reflections of 368697 total
@@ -3877,7 +3877,7 @@ <h3>Scaling and Merging<a class="headerlink" href="#scaling-and-merging" title="
 <span class="linenos"> 67</span>Components to be refined in this cycle for all datasets: scale, decay, absorption
 <span class="linenos"> 68</span>Performing a round of scaling with an LBFGS minimizer. 
 <span class="linenos"> 69</span>
-<span class="linenos"> 70</span>Time taken for refinement 3.23
+<span class="linenos"> 70</span>Time taken for refinement 3.24
 <span class="linenos"> 71</span>
 <span class="linenos"> 72</span>Refinement steps:
 <span class="linenos"> 73</span>+--------+--------+----------+
@@ -3935,7 +3935,7 @@ <h3>Scaling and Merging<a class="headerlink" href="#scaling-and-merging" title="
 <span class="linenos">125</span>Components to be refined in this cycle for all datasets: scale, decay, absorption
 <span class="linenos">126</span>Performing a round of scaling with an LBFGS minimizer. 
 <span class="linenos">127</span>
-<span class="linenos">128</span>Time taken for refinement 0.93
+<span class="linenos">128</span>Time taken for refinement 0.92
 <span class="linenos">129</span>
 <span class="linenos">130</span>Refinement steps:
 <span class="linenos">131</span>+--------+--------+----------+
@@ -3987,7 +3987,7 @@ <h3>Scaling and Merging<a class="headerlink" href="#scaling-and-merging" title="
 <span class="linenos">177</span>Components to be refined in this cycle for all datasets: scale, decay, absorption
 <span class="linenos">178</span>Performing a round of scaling with a Levenberg-Marquardt minimizer.
 <span class="linenos">179</span>
-<span class="linenos">180</span>Time taken for refinement 3.38
+<span class="linenos">180</span>Time taken for refinement 3.41
 <span class="linenos">181</span>
 <span class="linenos">182</span>Refinement steps:
 <span class="linenos">183</span>+--------+--------+----------+
@@ -4008,7 +4008,7 @@ <h3>Scaling and Merging<a class="headerlink" href="#scaling-and-merging" title="
 <span class="linenos">198</span>Components to be refined in this cycle for all datasets: scale, decay, absorption
 <span class="linenos">199</span>Performing a round of scaling with a Levenberg-Marquardt minimizer.
 <span class="linenos">200</span>
-<span class="linenos">201</span>Time taken for refinement 1.06
+<span class="linenos">201</span>Time taken for refinement 1.07
 <span class="linenos">202</span>
 <span class="linenos">203</span>Refinement steps:
 <span class="linenos">204</span>+--------+--------+----------+
@@ -4058,7 +4058,7 @@ <h3>Scaling and Merging<a class="headerlink" href="#scaling-and-merging" title="
 <span class="linenos">248</span>The reflection table variances have been adjusted to account for the
 <span class="linenos">249</span>uncertainty in the scaling model
 <span class="linenos">250</span>
-<span class="linenos">251</span>Total time taken: 18.2512s 
+<span class="linenos">251</span>Total time taken: 18.8897s 
 <span class="linenos">252</span>
 <span class="linenos">253</span>================================================================================
 <span class="linenos">254</span>