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update generated tutorial data (master)
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tutorial_data/master/betalactamase/dials.find_spots.log

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The following parameters have been modified:
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spotfinder {

tutorial_data/master/betalactamase/dials.import.log

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input {

tutorial_data/master/betalactamase/dials.index.log

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input {

tutorial_data/master/betalactamase/dials.integrate.log

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integration {
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mp {
@@ -128,11 +128,11 @@ Modelling reflection profiles
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Split 13 reflections overlapping job boundaries
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Memory situation report:
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Available system memory : 126801.3 MB
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Maximum memory for processing : 101441.1 MB
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Current memory usage : 522.4 MB
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Available system memory : 129003.3 MB
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Maximum memory for processing : 103202.6 MB
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Current memory usage : 522.3 MB
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Memory required for shoeboxes : 2.7 MB
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Memory required per process : 525.1 MB
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Memory required per process : 525.0 MB
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Processing reflections in the following blocks of images:
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Timing information for reference profile formation
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+-------------------+---------------+
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| Read time | 61.42 seconds |
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| Extract time | 0.53 seconds |
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| Read time | 60.60 seconds |
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| Extract time | 0.57 seconds |
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| Pre-process time | 0.12 seconds |
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| Process time | 29.05 seconds |
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| Process time | 29.46 seconds |
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| Post-process time | 0.00 seconds |
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| Total time | 91.49 seconds |
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| Total time | 91.05 seconds |
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+-------------------+---------------+
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================================================================================
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Split 112 reflections overlapping job boundaries
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Memory situation report:
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Available system memory : 126801.3 MB
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Maximum memory for processing : 101441.1 MB
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Available system memory : 129003.3 MB
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Maximum memory for processing : 103202.6 MB
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Current memory usage : 540.5 MB
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Memory required for shoeboxes : 14.5 MB
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Memory required per process : 554.9 MB
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Timing information for integration
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+-------------------+----------------+
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| Read time | 62.26 seconds |
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| Extract time | 2.87 seconds |
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| Pre-process time | 0.48 seconds |
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| Process time | 147.79 seconds |
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| Read time | 62.58 seconds |
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| Extract time | 2.80 seconds |
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| Pre-process time | 0.50 seconds |
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| Process time | 148.00 seconds |
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| Post-process time | 0.00 seconds |
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| Total time | 214.36 seconds |
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| Total time | 214.99 seconds |
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+-------------------+----------------+
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Removing 41640 unintegrated reflections of 368697 total

tutorial_data/master/betalactamase/dials.refine.log

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input {

tutorial_data/master/betalactamase/dials.refine_bravais_settings.log

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input {

tutorial_data/master/betalactamase/dials.reindex.log

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change_of_basis_op = "a+b,-a+b,c"

tutorial_data/master/betalactamase/dials.scale.log

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experiments = symmetrized.expt
@@ -125,7 +125,7 @@ A round of outlier rejection has been performed,
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Components to be refined in this cycle for all datasets: scale, decay, absorption
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Performing a round of scaling with an LBFGS minimizer.
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Time taken for refinement 0.93
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Time taken for refinement 0.92
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Refinement steps:
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+--------+--------+----------+
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Components to be refined in this cycle for all datasets: scale, decay, absorption
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Performing a round of scaling with a Levenberg-Marquardt minimizer.
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Time taken for refinement 1.09
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Time taken for refinement 1.08
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Refinement steps:
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+--------+--------+----------+
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The reflection table variances have been adjusted to account for the
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Total time taken: 18.4274s
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Total time taken: 18.2973s
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================================================================================
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tutorial_data/master/betalactamase/dials.scale_cut.log

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cut_data {
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d_min = 1.4
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Components to be refined in this cycle for all datasets: scale, decay, absorption
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Performing a round of scaling with an LBFGS minimizer.
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Time taken for refinement 0.90
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Time taken for refinement 0.94
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Components to be refined in this cycle for all datasets: scale, decay, absorption
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Performing a round of scaling with a Levenberg-Marquardt minimizer.
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Time taken for refinement 2.21
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Time taken for refinement 2.20
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Refinement steps:
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+--------+--------+----------+
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Components to be refined in this cycle for all datasets: scale, decay, absorption
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Performing a round of scaling with a Levenberg-Marquardt minimizer.
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Time taken for refinement 1.07
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Time taken for refinement 1.05
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Refinement steps:
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+--------+--------+----------+
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The reflection table variances have been adjusted to account for the
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Total time taken: 13.0435s
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Total time taken: 13.0632s
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================================================================================
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tutorial_data/master/betalactamase/dials.symmetry.log

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input {

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