rename chapter operations -> manipulations

Author: dimitri-yatsenko

.devcontainer/Dockerfile

@@ -30,10 +30,10 @@ RUN wget --quiet https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86
 # Install additional tools or packages as needed in the base environment
 RUN conda init bash && \
     conda install -n base -c conda-forge python=3.11 python-graphviz jupyterlab 'nodejs>20,<21' pip -y && \
+    pip install ipython-sql && \
     pip install mystmd && \
     pip install jupyterlab_myst && \
     pip install git+https://github.com/datajoint/datajoint-python.git && \
-    pip install ipython-sql && \
     pip install Faker
 
 # Set up shell to use Conda by default

LICENSE.md

@@ -4,7 +4,7 @@
 
 By exercising the Licensed Rights (defined below), You accept and agree to be bound by the terms and conditions of this Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International Public License ("Public License"). To the extent this Public License may be interpreted as a contract, You are granted the Licensed Rights in consideration of Your acceptance of these terms and conditions, and the Licensor grants You such rights in consideration of benefits the Licensor receives from making the Licensed Material available under these terms and conditions.
 
-1. License
+## 1. License
 You are free to:
 - **Share** — copy and redistribute the material in any medium or format
 
@@ -15,7 +15,7 @@ Under the following terms:
 
 No additional restrictions — You may not apply legal terms or technological measures that legally restrict others from doing anything the license permits.
 
-2. Notices:
+## 2. Notices:
 - You do not have to comply with the license for elements of the material in the public domain or where your use is permitted by an applicable exception or limitation.
 - No warranties are given. The license may not give you all of the permissions necessary for your intended use. For example, other rights such as publicity, privacy, or moral rights may limit how you use the material.
 

README.md

@@ -1,6 +1,6 @@
 [![License: CC BY-NC-ND 4.0](https://img.shields.io/badge/License-CC%20BY--NC--ND%204.0-lightgrey.svg)](https://creativecommons.org/licenses/by-nc-nd/4.0/)
 
-# Datajoint Workbook
+# Datajoint Book
 
 Welcome to DataJoint book, a comprehensive introduction to relational database programming in the context of scientific computing and data science.
 

book/00-introduction/00-purpose.md

@@ -9,12 +9,6 @@ authors:
 
 This book is a comprehensive guide to *DataJoint for Python* — a specialized framework designed to implement scientific data pipelines that manage data and orchestrate computations in collaborative and AI-powered scientific projects. At its core, DataJoint builds upon the traditional relational database model, enabling scientists, data engineers, and programmers to design and query relational databases. However, DataJoint’s main innovation lies in introducing computational dependencies as a first-class feature within the relational database. This allows researchers to define, execute, and reproduce data processing pipelines with precision and efficiency.
 
-Existing documentation for DataJoint can be found here:
-* Current documentation: https://datajoint.com/docs/core/datajoint-python/  
-  - hosted at https://github.com/datajoint/datajoint-python/
-* Legacy documentation: https://datajoint.github.io/datajoint-docs-original/python/ 
-  - hosted at https://github.com/datajoint/datajoint-docs-original
-
 # Purpose of This Book
 
 This book aims to introduce database programming for data science and scientific computing, using DataJoint as the central tool. DataJoint can be viewed as a data model, a database programming language, and a software framework all in one. Throughout the book, you will learn a rigorous database design methodology, which also serves as a general introduction to relational database programming—albeit with a unique perspective. To support this learning, code examples are provided in both DataJoint and SQL (Structured Query Language), the most common language for interacting with relational databases.

book/35-example-designs/010-sales-database.ipynb

@@ -33,7 +33,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 6,
+   "execution_count": 2,
    "metadata": {},
    "outputs": [
     {
@@ -78,7 +78,7 @@
        "[]"
       ]
      },
-     "execution_count": 6,
+     "execution_count": 2,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -89,15 +89,15 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 7,
+   "execution_count": 3,
    "metadata": {},
    "outputs": [
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "[2025-01-14 01:25:11,122][INFO]: Connecting root@localhost:3306\n",
-      "[2025-01-14 01:25:11,146][INFO]: Connected root@localhost:3306\n"
+      "[2025-01-15 01:40:49,567][INFO]: Connecting root@localhost:3306\n",
+      "[2025-01-15 01:40:49,584][INFO]: Connected root@localhost:3306\n"
      ]
     }
    ],
@@ -109,7 +109,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 8,
+   "execution_count": 4,
    "metadata": {},
    "outputs": [
     {
@@ -270,17 +270,170 @@
        "</svg>"
       ],
       "text/plain": [
-       "<datajoint.diagram.Diagram at 0x7f065b758a50>"
+       "<datajoint.diagram.Diagram at 0x7f2a5ab50450>"
       ]
      },
-     "execution_count": 8,
+     "execution_count": 4,
      "metadata": {},
      "output_type": "execute_result"
     }
    ],
    "source": [
     "dj.Diagram(schema)"
    ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 5,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/html": [
+       "\n",
+       "    \n",
+       "    <style type=\"text/css\">\n",
+       "        .Table{\n",
+       "            border-collapse:collapse;\n",
+       "        }\n",
+       "        .Table th{\n",
+       "            background: #A0A0A0; color: #ffffff; padding:4px; border:#f0e0e0 1px solid;\n",
+       "            font-weight: normal; font-family: monospace; font-size: 100%;\n",
+       "        }\n",
+       "        .Table td{\n",
+       "            padding:4px; border:#f0e0e0 1px solid; font-size:100%;\n",
+       "        }\n",
+       "        .Table tr:nth-child(odd){\n",
+       "            background: #ffffff;\n",
+       "            color: #000000;\n",
+       "        }\n",
+       "        .Table tr:nth-child(even){\n",
+       "            background: #f3f1ff;\n",
+       "            color: #000000;\n",
+       "        }\n",
+       "        /* Tooltip container */\n",
+       "        .djtooltip {\n",
+       "        }\n",
+       "        /* Tooltip text */\n",
+       "        .djtooltip .djtooltiptext {\n",
+       "            visibility: hidden;\n",
+       "            width: 120px;\n",
+       "            background-color: black;\n",
+       "            color: #fff;\n",
+       "            text-align: center;\n",
+       "            padding: 5px 0;\n",
+       "            border-radius: 6px;\n",
+       "            /* Position the tooltip text - see examples below! */\n",
+       "            position: absolute;\n",
+       "            z-index: 1;\n",
+       "        }\n",
+       "        #primary {\n",
+       "            font-weight: bold;\n",
+       "            color: black;\n",
+       "        }\n",
+       "        #nonprimary {\n",
+       "            font-weight: normal;\n",
+       "            color: white;\n",
+       "        }\n",
+       "\n",
+       "        /* Show the tooltip text when you mouse over the tooltip container */\n",
+       "        .djtooltip:hover .djtooltiptext {\n",
+       "            visibility: visible;\n",
+       "        }\n",
+       "    </style>\n",
+       "    \n",
+       "    <b></b>\n",
+       "        <div style=\"max-height:1000px;max-width:1500px;overflow:auto;\">\n",
+       "        <table border=\"1\" class=\"Table\">\n",
+       "            <thead> <tr style=\"text-align: right;\"> <th> <div class=\"djtooltip\">\n",
+       "                            <p id=\"primary\">customerNumber</p>\n",
+       "                            <span class=\"djtooltiptext\"></span>\n",
+       "                        </div></th><th><div class=\"djtooltip\">\n",
+       "                            <p id=\"primary\">checkNumber</p>\n",
+       "                            <span class=\"djtooltiptext\"></span>\n",
+       "                        </div></th><th><div class=\"djtooltip\">\n",
+       "                            <p id=\"nonprimary\">paymentDate</p>\n",
+       "                            <span class=\"djtooltiptext\"></span>\n",
+       "                        </div></th><th><div class=\"djtooltip\">\n",
+       "                            <p id=\"nonprimary\">amount</p>\n",
+       "                            <span class=\"djtooltiptext\"></span>\n",
+       "                        </div> </th> </tr> </thead>\n",
+       "            <tbody> <tr> <td>103</td>\n",
+       "<td>HQ336336</td>\n",
+       "<td>2004-10-19</td>\n",
+       "<td>6066.78</td></tr><tr><td>103</td>\n",
+       "<td>JM555205</td>\n",
+       "<td>2003-06-05</td>\n",
+       "<td>14571.44</td></tr><tr><td>103</td>\n",
+       "<td>OM314933</td>\n",
+       "<td>2004-12-18</td>\n",
+       "<td>1676.14</td></tr><tr><td>112</td>\n",
+       "<td>BO864823</td>\n",
+       "<td>2004-12-17</td>\n",
+       "<td>14191.12</td></tr><tr><td>112</td>\n",
+       "<td>HQ55022</td>\n",
+       "<td>2003-06-06</td>\n",
+       "<td>32641.98</td></tr><tr><td>112</td>\n",
+       "<td>ND748579</td>\n",
+       "<td>2004-08-20</td>\n",
+       "<td>33347.88</td></tr><tr><td>114</td>\n",
+       "<td>GG31455</td>\n",
+       "<td>2003-05-20</td>\n",
+       "<td>45864.03</td></tr><tr><td>114</td>\n",
+       "<td>MA765515</td>\n",
+       "<td>2004-12-15</td>\n",
+       "<td>82261.22</td></tr><tr><td>114</td>\n",
+       "<td>NP603840</td>\n",
+       "<td>2003-05-31</td>\n",
+       "<td>7565.08</td></tr><tr><td>114</td>\n",
+       "<td>NR27552</td>\n",
+       "<td>2004-03-10</td>\n",
+       "<td>44894.74</td></tr><tr><td>119</td>\n",
+       "<td>DB933704</td>\n",
+       "<td>2004-11-14</td>\n",
+       "<td>19501.82</td></tr><tr><td>119</td>\n",
+       "<td>LN373447</td>\n",
+       "<td>2004-08-08</td>\n",
+       "<td>47924.19</td> </tr> </tbody>\n",
+       "        </table>\n",
+       "        <p>...</p>\n",
+       "        <p>Total: 273</p></div>\n",
+       "        "
+      ],
+      "text/plain": [
+       "*customerNumbe *checkNumber   paymentDate    amount      \n",
+       "+------------+ +------------+ +------------+ +----------+\n",
+       "103            HQ336336       2004-10-19     6066.78     \n",
+       "103            JM555205       2003-06-05     14571.44    \n",
+       "103            OM314933       2004-12-18     1676.14     \n",
+       "112            BO864823       2004-12-17     14191.12    \n",
+       "112            HQ55022        2003-06-06     32641.98    \n",
+       "112            ND748579       2004-08-20     33347.88    \n",
+       "114            GG31455        2003-05-20     45864.03    \n",
+       "114            MA765515       2004-12-15     82261.22    \n",
+       "114            NP603840       2003-05-31     7565.08     \n",
+       "114            NR27552        2004-03-10     44894.74    \n",
+       "119            DB933704       2004-11-14     19501.82    \n",
+       "119            LN373447       2004-08-08     47924.19    \n",
+       "   ...\n",
+       " (Total: 273)"
+      ]
+     },
+     "execution_count": 5,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "Payment()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": []
   }
  ],
  "metadata": {