from setup to pyproject

Author: dokester

MANIFEST.in

@@ -1,6 +1,7 @@
 include BayesicFitting/examples/*.ipynb
-include BayesicFitting/examples/data/*.csv
+include BayesicFitting/examples/data/*
 include docs/images/*.dia
 include docs/images/*.png
+include docs/images/*.svg
 include docs/*.md
 include LICENSE

docs/manual.md

@@ -1202,16 +1202,16 @@ A **Sample** is a collection of items.
 
 The resulting samples from the posterior are collected in list of
 samples, a **SampleList**.  Once a sample list is obtained from a
-NestedSampler run, weighted average parameters and scale can be obtainde
-from it.  The maximum likelihood version of the same, is located at the
+NestedSampler run, weighted average parameters and scale can be
+calculated.  Maximum likelihood versions of the same, are located at the
 last index of the sample list.  Median and modus version can be found at
 the midpoint of the cumulative weights, resp.  the maximum value of the
 weights. 
 
     slist = ns.samples
     param = slist.parameters		## same as params above
     mlpar = slist.maxLikelihoodParameters
-    
+    medianIndex = slist.medianIndex
 
 
 

pyproject.toml

@@ -0,0 +1,110 @@
+[build-system]
+requires = ["setuptools"]
+build-backend = "setuptools.build_meta"
+
+[project]
+name = "BayesicFitting"
+version = "3.2.5"
+dependencies = [
+    'numpy >= 1.9',
+    'matplotlib >= 2.0',
+    'scipy >= 1.0',
+    'astropy >= 2.0',
+    'future'
+]
+authors = [
+    { name = "Do Kester", email = "dokester@home.nl" }
+]
+description = "A Toolbox for Bayesian Fitting and Evidence Calculation"
+readme = "README.md"
+requires-python = ">=3.8"
+license = "GPL-3.0-or-later"
+keywords = [
+    'Bayesian', 'modeling', 'evidence', 'statistics', 'analysis',
+    'regression', 'inference', 'optimization','nested sampling', 'fitting'
+]
+classifiers = [
+    "Development Status :: 4 - Beta",
+    "Programming Language :: Python :: 3",
+    "Operating System :: OS Independent",
+    "Intended Audience :: Science/Research",
+    "Topic :: Scientific/Engineering"
+]
+
+[project-urls]
+homepage = "https://dokester.github.io/BayesicFitting/"
+
+#[tool.setuptools]
+#packages=[
+#    'BayesicFitting', 'BayesicFitting/source', 'BayesicFitting/source/kernels',
+#    'BayesicFitting/test', 'BayesicFitting/examples'
+#]
+
+[tool.ruff]
+# Exclude a variety of commonly ignored directories.
+exclude = [
+    "BayesicFitting/TBD-examples",
+    "BayesicFitting/TBD-tests",
+    "BayesicFitting/__pycache__",
+    ".git",
+    ".pytest_cache",
+    ".ruff_cache",
+    "build",
+    "_build",
+    "dist",
+    "docs",
+    "REFDOC",
+    "refman"
+]
+
+# Same as Black.
+line-length = 100
+indent-width = 4
+
+# Assume Python 3.8
+target-version = "py310"
+
+[tool.ruff.lint]
+# Enable Pyflakes (`F`) and a subset of the pycodestyle (`E`)  codes by default.
+# Unlike Flake8, Ruff doesn't enable pycodestyle warnings (`W`) or
+# McCabe complexity (`C901`) by default.
+select = ["E4", "E7", "E9", "F", "NPY201"]
+
+# F401 : imported not used
+# E701 : multiple statements on one line
+ignore = ["F401", "E701"]
+
+# Allow fix for all enabled rules (when `--fix`) is provided.
+fixable = ["ALL"]
+unfixable = []
+
+# Allow unused variables when underscore-prefixed.
+dummy-variable-rgx = "^(_+|(_+[a-zA-Z0-9_]*[a-zA-Z0-9]+?))$"
+
+[tool.ruff.format]
+# Like Black, use double quotes for strings.
+quote-style = "double"
+
+# Like Black, indent with spaces, rather than tabs.
+indent-style = "space"
+
+# Like Black, respect magic trailing commas.
+skip-magic-trailing-comma = false
+
+# Like Black, automatically detect the appropriate line ending.
+line-ending = "auto"
+
+# Enable auto-formatting of code examples in docstrings. Markdown,
+# reStructuredText code/literal blocks and doctests are all supported.
+#
+# This is currently disabled by default, but it is planned for this
+# to be opt-out in the future.
+docstring-code-format = false
+
+# Set the line length limit used when formatting code snippets in
+# docstrings.
+#
+# This only has an effect when the `docstring-code-format` setting is
+# enabled.
+docstring-code-line-length = "dynamic"
+