MSTest templates are using MSTest.Sdk and are currently relying on the auto-generated entry point. I think it's a good idea to make the entry point explicit as it is then easier for users to understand how they can plug into the test application.
My suggestion is to introduce a new option (CLI + VS) to have explicit entry point (vs auto-generated) and to have the explicit as default.
This requires MSTest 3.6 to be released.