Release v1.4.4

Reorder dependencies so uv resolver picks compatible versions.
uv resolves in listed order, so constrained packages (scanpy, mellon)
must appear before flexible foundations (numpy, pandas) to avoid
broken backtracking to ancient scanpy/numba/llvmlite.
See: astral-sh/uv#5161

Author: katosh

README.md

@@ -73,6 +73,9 @@ ____
 Release Notes
 -------------
 
+ ### Version 1.4.4
+ * Fix: reorder dependencies to work around uv resolver order-dependence ([astral-sh/uv#5161](https://github.com/astral-sh/uv/issues/5161)), which caused `uv pip install palantir` to resolve to incompatible ancient versions of scanpy/numba/llvmlite
+
  ### Version 1.4.3
  * Avoid warning about coloring in `plot_trajectories`
  * Fix: forward `eigvec_key` to fallback method in `early_cell()`

pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "palantir"
-version = "1.4.3"
+version = "1.4.4"
 description = "Palantir for modeling continuous cell state and cell fate choices in single cell data"
 authors = [
     {name = "Palantir development team", email = "manu.talanki@gmail.com"}
@@ -27,18 +27,22 @@ classifiers = [
     "Topic :: Scientific/Engineering :: Visualization",
 ]
 dependencies = [
+    # Most constrained first — uv resolves in listed order, so packages
+    # with tight transitive chains (numba/llvmlite, jax) must come before
+    # flexible foundations (numpy, pandas) to avoid broken resolutions.
+    # See: https://github.com/astral-sh/uv/issues/5161
+    "scanpy>=1.6.0",
+    "mellon>=1.6.1",
+    "anndata>=0.8.0",
+    "ml_dtypes>=0.5.0",
+    "igraph>=0.11.8",
+    "scikit-learn",
+    "matplotlib>=3.8.0",
     "numpy>=1.14.2",
     "pandas>=0.22.0",
     "scipy>=1.3",
     "networkx>=2.1",
-    "scikit-learn",
     "joblib",
-    "matplotlib>=3.8.0",
-    "anndata>=0.8.0",
-    "scanpy>=1.6.0",
-    "mellon>=1.6.1",
-    "ml_dtypes>=0.5.0",
-    "igraph>=0.11.8",
 ]
 
 [project.optional-dependencies]

src/palantir/version.py

@@ -6,7 +6,7 @@
     __version__ = importlib.metadata.version("palantir")
 except importlib.metadata.PackageNotFoundError:
     # Package is not installed, fall back to hardcoded version
-    __version__ = "1.4.3"  # Should match pyproject.toml
+    __version__ = "1.4.4"  # Should match pyproject.toml
 
 __author__ = "Palantir development team"
 __author_email__ = "manu.talanki@gmail.com"