Release v1.4.2

Author: katosh

README.md

@@ -73,14 +73,12 @@ ____
 Release Notes
 -------------
 
- ### Next Release
- * fix "lightgray" error in `plot_trend`
- * better cell index checks for compatibility with spatial data
- * address pygam incompatibility with newer scipy versions
- * address fcsparser incompatibility with Numpy 2.0
- * use different joblib backend in buggy version
- * more convenient cell-name handling for integers (e.g., in spatial data)
-
+ ### Version 1.4.2
+ * Fix "lightgray" error in `plot_trend`
+ * Address pygam incompatibility with newer scipy versions (automatic skip in tests, user warnings)
+ * Address fcsparser incompatibility with NumPy 2.0 (automatic skip in tests, user warnings)
+ * Use different joblib backend in Python 3.12+ with joblib < 1.5 to avoid ResourceTracker warnings
+ * More convenient cell-name handling for integers (e.g., in spatial data) with automatic type conversion
 
  ### Version 1.4.1
   * update `LICENSE` file to be consistent with MIT - license

pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "palantir"
-version = "1.4.2rc"
+version = "1.4.2"
 description = "Palantir for modeling continuous cell state and cell fate choices in single cell data"
 authors = [
     {name = "Palantir development team", email = "manu.talanki@gmail.com"}

src/palantir/version.py

@@ -6,7 +6,7 @@
     __version__ = importlib.metadata.version("palantir")
 except importlib.metadata.PackageNotFoundError:
     # Package is not installed, fall back to hardcoded version
-    __version__ = "1.4.2rc"  # Should match pyproject.toml
+    __version__ = "1.4.2"  # Should match pyproject.toml
 
 __author__ = "Palantir development team"
 __author_email__ = "manu.talanki@gmail.com"