Request for barcode mapping in human_cd34_bm_rep1.h5ad

[jiawei-zhong]

Hi!

Thank you for this great tool and resource!

I noticed that the cell names in human_cd34_bm_rep1.h5ad are formatted like "Run4_120703408880541", while the meta table in the Human Cell Atlas provides explicit barcodes (e.g., TTTATGCTCTCTGCTG). I downloaded the raw fastq and reprocessed it with Cell Ranger, but I’m unsure how to map the barcodes to the UMAP coordinates in your .h5ad file.

Would it be possible for you to share the mapping between the cell names in the .h5ad file and the original barcodes?

Thank you in advance!

Best,

Jiawei

[ManuSetty]

Hello - this is described here: #101