DPimport: A command line glob importer for DPdash

DPimport is a command line tool for importing files into DPdash using a simple glob expression.

Table of contents

1. Installation
2. Configuration
3. Usage

Installation

Just use pip

pip install git+https://github.com/harvard-nrg/dpimport

Configuration

DPimport requires a configuration file -c|--config for establishing a database connection. You will find an example configuration file in the examples directory within this repository.

Usage

The main command line tool is import.py. You can use this tool to import any DPdash-compatible CSV files or metadata files using the direct path to a file or a glob expression (use single quotes to avoid shell expansion)

import.py -c config.yml '/PHOENIX/GENERAL/STUDY_A/SUB_001/DATA_TYPE/processed/*.csv'