fast5 Could not extract read data from file error

[ibseq]

Hi
does anybody got this error while running albcore from the docker: these are the first lines of the pipeline.log
2019-05-30 10:04:56,759 ONT Albacore Sequencing Pipeline Software (version 1.1.1)
2019-05-30 10:04:56,760 Debug level is 0
2019-05-30 10:04:57,429 Submitting file "FAK51411_cdead9df53686dbe5ce09de1dba69fd434c80e06_18.fast5".
2019-05-30 10:04:57,437 Could not extract read data from file "FAK51411_cdead9df53686dbe5ce09de1dba69fd434c80e06_18.fast5".
2019-05-30 10:04:57,438 Submitting file "FAK51411_cdead9df53686dbe5ce09de1dba69fd434c80e06_9.fast5".

thanks
ib

[cyanochic]

I'm getting a similar error with a different version. Were you able to solve this issue or work around it?

Here's the first lines from pipeline.log.
2019-08-02 17:41:54,107 ONT Albacore Sequencing Pipeline Software (version 2.3.4)
2019-08-02 17:41:54,107 Debug level is 0
2019-08-02 17:41:54,109 No reference given for module aligner
2019-08-02 17:41:54,109 Using config file: layout_raw_basecall_1d.jsn
2019-08-02 17:41:54,111 259 files found in input folder
2019-08-02 17:41:54,111 include calibration strand detection: True
2019-08-02 17:41:54,111 include alignment: False
2019-08-02 17:41:54,111 include barcoding: False
2019-08-02 17:41:54,112 telemetry enabled: True
2019-08-02 17:41:54,113 No option 'pipeline.min_qscore_1dsq' in the config, so using the default of 0.0
2019-08-02 17:41:54,497 Submitting file "FAK68744_3bc5a9cd9af35bfeab58778e9ecf6fd2f278db5b_0.fast5".
2019-08-02 17:41:54,499 Could not extract read data from file "FAK68744_3bc5a9cd9af35bfeab58778e9ecf6fd2f278db5b_0.fast5".