adding mis_rm_counts for case_control fail

mkoretsky1 · mkoretsky1 · commit 1a3b8cadd2df · 2023-12-15T09:14:41.000-05:00
diff --git a/genotools/qc.py b/genotools/qc.py
@@ -729,6 +729,8 @@ def run_case_control_prune(self, p_threshold=1e-4):
 
             process_complete = False
 
+            mis_rm_count = 0
+
         os.remove(f'{geno_path}.bed')
         os.remove(f'{geno_path}.bim')
         os.remove(f'{geno_path}.fam')
