Bug: Fix dependency compatibility warnings and sparse string inference (#220) (#221)

* sparse series handling fixes + deprecation warning fixes +  pyproject.toml cleanup



* remove uv.lock



* ci updates



* updated precommit



* lint fixes for 3.9 to 3.14



* ci updates



* running pre-commit hooks manually



* running pre-commit hooks manually



* running pre-commit hooks manually



---------

Signed-off-by: Ian Eaves <ian.k.eaves@gmail.com>

Author: ieaves

.github/workflows/ci.yml

@@ -15,19 +15,19 @@ jobs:
     - name: Install GraphViz
       run: sudo apt-get install graphviz
 
-    - uses: actions/checkout@v2
+    - uses: actions/checkout@v6
 
     - name: Configurating Git
       run: |
         git config --local user.email "action@github.com"
         git config --local user.name "GitHub Action"
 
-    - name: Set up Python 3.8
-      uses: actions/setup-python@v1
+    - name: Set up Python 3.13
+      uses: actions/setup-python@v6
       with:
-        python-version: 3.8
+        python-version: "3.13"
 
-    - uses: actions/cache@v1
+    - uses: actions/cache@v4
       name: Cache pip dependencies
       with:
         path: ~/.cache/pip

.github/workflows/pypi.yml

@@ -11,15 +11,15 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-    - uses: actions/checkout@v2
+    - uses: actions/checkout@v6
       name: Checkout repo
 
     - name: Set up Python 3.12
-      uses: actions/setup-python@v1
+      uses: actions/setup-python@v6
       with:
-        python-version: 3.12
-    
-    - uses: actions/cache@v1
+        python-version: "3.12"
+
+    - uses: actions/cache@v4
       name: Cache pip dependencies
       with:
         path: ~/.cache/pip

.github/workflows/tests.yml

@@ -7,26 +7,40 @@ on:
     branches: [ master, develop ]
 
 jobs:
+  lint:
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v6
+    - name: Set up Python 3.14
+      uses: actions/setup-python@v6
+      with:
+        python-version: "3.14"
+    - name: Install lint dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install pre-commit
+    - name: Lint with pre-commit
+      run: |
+        pre-commit run --all-files
+
   test:
     strategy:
       matrix:
         os: [ ubuntu-latest ]
-        python: [ 3.9, "3.10", 3.11, 3.12, 3.13 ]
+        python: [ "3.9", "3.10", "3.11", "3.12", "3.13", "3.14" ]
     runs-on: ${{ matrix.os }}
 
     steps:
-    - uses: actions/checkout@v2
+    - uses: actions/checkout@v6
     - name: Set up Python ${{ matrix.python }}
-      uses: actions/setup-python@v1
+      uses: actions/setup-python@v6
       with:
         python-version: ${{ matrix.python }}
     - name: Install dependencies
       run: |
         python -m pip install --upgrade pip
         pip install -e .[testing]
-    - name: Lint with pre-commit
-      run: |
-        pre-commit run --all-files
     - name: Test with pytest
       run: |
         pytest -p no:spark -m "not spark_test"

.pre-commit-config.yaml

@@ -1,9 +1,9 @@
 repos:
 -   repo: https://github.com/asottile/pyupgrade
-    rev: v3.17.0
+    rev: v3.21.1
     hooks:
     -   id: pyupgrade
-        args: ['--py36-plus','--exit-zero-even-if-changed']
+        args: ['--py39-plus','--exit-zero-even-if-changed']
 -   repo: https://github.com/pycqa/isort
 
     rev: 5.13.2
@@ -39,4 +39,4 @@ repos:
 -   repo: https://github.com/pre-commit/pygrep-hooks
     rev: v1.10.0
     hooks:
-    -   id: rst-backticks
+    -   id: rst-backticks

examples/data_analysis/categorical.py

@@ -1,4 +1,5 @@
-from typing import List, Sequence
+from collections.abc import Sequence
+from typing import List
 
 import numpy as np
 import pandas as pd
@@ -23,7 +24,7 @@ def to_category(series: pd.Series) -> pd.Series:
         )
 
 
-def _get_relations(cls) -> List[TypeRelation]:
+def _get_relations(cls) -> list[TypeRelation]:
     from visions.types import Generic
 
     relations = [

examples/ml_problem_example.py

@@ -1,4 +1,4 @@
-from typing import Sequence
+from collections.abc import Sequence
 
 import numpy as np
 import pandas as pd

pyproject.toml

@@ -8,18 +8,19 @@ name = "visions"
 dynamic = ["version"]
 description = "Visions"
 readme = "README.md"
-license = { text = "BSD License" }
+license = "BSD-4-Clause"
+license-files = ["LICENSE"]
 authors = [
     { name = "Dylan Profiler", email = "visions@ictopzee.nl" }
 ]
-requires-python = ">=3.8"
+requires-python = ">=3.9"
 classifiers = [
-    "Programming Language :: Python :: 3",
     "Programming Language :: Python :: 3.9",
     "Programming Language :: Python :: 3.10",
     "Programming Language :: Python :: 3.11",
     "Programming Language :: Python :: 3.12",
     "Programming Language :: Python :: 3.13",
+    "Programming Language :: Python :: 3.14",
 ]
 
 dependencies = [

src/visions/__init__.py

@@ -12,4 +12,4 @@
 from visions.types import *
 from visions.typesets import *
 
-__version__ = "0.8.1"
+__version__ = "0.8.2"

src/visions/backends/numpy/array_utils.py

@@ -1,5 +1,6 @@
 import functools
-from typing import Callable, Sequence, Tuple, TypeVar, Union
+from collections.abc import Sequence
+from typing import Callable, Tuple, TypeVar, Union
 
 import numpy as np
 
@@ -39,7 +40,7 @@ def inner(array: np.ndarray, *args, **kwargs) -> bool:
     return inner
 
 
-def _base_all_type(array: np.ndarray, dtypes: Union[type, Tuple[type, ...]]) -> bool:
+def _base_all_type(array: np.ndarray, dtypes: Union[type, tuple[type, ...]]) -> bool:
     return all(isinstance(v, dtypes) for v in array)
 
 
@@ -48,7 +49,7 @@ def _base_all_type(array: np.ndarray, dtypes: Union[type, Tuple[type, ...]]) ->
     # There are alternative implementations with forceobj=True which work in all cases
     # including the use of isinstance, but in those cases worst case performance can be substantially worse
     # than the default python implementation.
-    def all_type_numba(dtype: Union[Tuple, T]):
+    def all_type_numba(dtype: Union[tuple, T]):
         @nb.jit(nopython=True)
         def inner(array: np.ndarray) -> bool:
             for i in nb.prange(array.size):
@@ -58,10 +59,10 @@ def inner(array: np.ndarray) -> bool:
 
         return inner
 
-    def all_type(array: np.ndarray, dtypes: Union[type, Tuple[type, ...]]) -> bool:
+    def all_type(array: np.ndarray, dtypes: Union[type, tuple[type, ...]]) -> bool:
         return _base_all_type(array, dtypes)
 
 else:
 
-    def all_type(array: np.ndarray, dtypes: Union[type, Tuple[type, ...]]) -> bool:
+    def all_type(array: np.ndarray, dtypes: Union[type, tuple[type, ...]]) -> bool:
         return _base_all_type(array, dtypes)

src/visions/backends/numpy/sequences.py

@@ -1,10 +1,11 @@
-from typing import Dict, Sequence
+from collections.abc import Sequence
+from typing import Dict
 from urllib.parse import urlparse
 
 import numpy as np
 
 
-def get_sequences() -> Dict[str, Sequence]:
+def get_sequences() -> dict[str, Sequence]:
     sequences = {
         "complex_series_float": [
             complex(0, 0),