variant-ABCD-HCP.Dockerfile

FROM ghcr.io/fcp-indi/c-pac/stage-base:abcd-hcp-v1.8.5.dev
LABEL org.opencontainers.image.description "Full C-PAC image with software dependencies version-matched to [ABCD-HCP BIDS fMRI Pipeline](https://github.com/DCAN-Labs/abcd-hcp-pipeline/blob/e480a8f99534f1b05f37bf44c64827384b69b383/Dockerfile)"
USER root

# install C-PAC
COPY dev/circleci_data/pipe-test_ci.yml /cpac_resources/pipe-test_ci.yml
COPY . /code
RUN pip install -e /code
# set up runscript
COPY dev/docker_data /code/docker_data
RUN rm -Rf /code/docker_data/Dockerfiles && \
    mv /code/docker_data/* /code && \
    rm -Rf /code/docker_data && \
    chmod +x /code/run.py && \
    chmod +x /code/run-with-freesurfer.sh
ENTRYPOINT ["/code/run-with-freesurfer.sh"]

# Link libraries for Singularity images
RUN ldconfig

RUN apt-get clean && \
    apt-get autoremove -y && \
    rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*

# set user
# USER c-pac_user