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Prepare CRAN release (#736)
* Prepare CRAN release * update readme * remove remotes, insight is on CRAN
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‎DESCRIPTION‎

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Type: Package
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Package: bayestestR
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Title: Understand and Describe Bayesian Models and Posterior Distributions
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Version: 0.16.1.11
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Version: 0.17.0
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Authors@R:
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c(person(given = "Dominique",
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family = "Makowski",
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Depends:
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R (>= 3.6)
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Imports:
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insight (>= 1.3.1),
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insight (>= 1.4.1),
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datawizard (>= 1.2.0),
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graphics,
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methods,
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lavaan,
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lme4,
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logspline (>= 2.1.21),
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marginaleffects (>= 0.26.0),
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marginaleffects (>= 0.29.0),
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MASS,
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mclust,
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mediation,
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Config/rcmdcheck/ignore-inconsequential-notes: true
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Config/Needs/website: easystats/easystatstemplate
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Config/Needs/check: stan-dev/cmdstanr
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Remotes: easystats/insight, vincentarelbundock/marginaleffects

‎NEWS.md‎

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# bayestestR (devel)
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# bayestestR 0.17.0
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## Changes
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‎R/append_datagrid.R‎

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if (inherits(object, c("emmGrid", "emm_list"))) {
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model <- attributes(object)$model
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} else {
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insight::check_if_installed("marginaleffects")
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insight::check_if_installed("marginaleffects", minimum_version = "0.29.0")
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model <- marginaleffects::components(object, "model")
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}
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if (!long && !is.null(model)) {

‎R/is_baysian_grid.R‎

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#' @keywords internal
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.is_baysian_grid.slopes <- function(x) {
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insight::check_if_installed("marginaleffects")
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insight::check_if_installed("marginaleffects", minimum_version = "0.29.0")
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!is.null(suppressWarnings(marginaleffects::get_draws(x, "PxD")))
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}
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‎R/utils.R‎

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#' @keywords internal
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.get_marginaleffects_draws <- function(object) {
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# errors and checks are handled by marginaleffects
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insight::check_if_installed("marginaleffects", minimum_version = "0.24.0")
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insight::check_if_installed("marginaleffects", minimum_version = "0.29.0")
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as.data.frame(marginaleffects::get_draws(object, shape = "DxP"))
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}
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‎README.md‎

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##
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## Parameter | Median | 95% CI | pd | ps
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## ----------------------------------------------------
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## Posterior | 8.95e-03 | [-1.97, 1.94] | 50.37% | 0.47
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## Posterior | 5.94e-04 | [-1.91, 1.92] | 50.05% | 0.46
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```
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`describe_posterior()` works for many objects, including more complex
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## Summary of Posterior Distribution
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##
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## Parameter | Median | Mean | MAP | 95% CI | pd | ps | Rhat | ESS
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## --------------------------------------------------------------------------------------
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## (Intercept) | 0.96 | 0.96 | 0.96 | [-0.81, 2.51] | 90.00% | 0.88 | 1.011 | 110.00
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## child | -1.16 | -1.16 | -1.16 | [-1.36, -0.94] | 100% | 1.00 | 0.996 | 278.00
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## camper | 0.73 | 0.72 | 0.73 | [ 0.54, 0.91] | 100% | 1.00 | 0.996 | 271.00
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## Parameter | Median | Mean | MAP | 95% CI | pd | ps | Rhat | ESS
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## -----------------------------------------------------------------------------------
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## (Intercept) | 0.96 | 0.96 | 0.96 | [-0.81, 2.51] | 90.00% | 0.88 | 1.011 | 110
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## child | -1.16 | -1.16 | -1.16 | [-1.36, -0.94] | 100% | 1.00 | 0.996 | 278
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## camper | 0.73 | 0.72 | 0.73 | [ 0.54, 0.91] | 100% | 1.00 | 0.996 | 271
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##
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## # Fixed effects (zero-inflated)
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##
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## Parameter | Median | Mean | MAP | 95% CI | pd | ps | Rhat | ESS
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## --------------------------------------------------------------------------------------
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## (Intercept) | -0.48 | -0.51 | -0.22 | [-2.03, 0.89] | 78.00% | 0.73 | 0.997 | 138.00
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## child | 1.85 | 1.86 | 1.81 | [ 1.19, 2.54] | 100% | 1.00 | 0.996 | 303.00
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## camper | -0.88 | -0.86 | -0.99 | [-1.61, -0.07] | 98.40% | 0.96 | 0.996 | 292.00
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## Parameter | Median | Mean | MAP | 95% CI | pd | ps | Rhat | ESS
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## -----------------------------------------------------------------------------------
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## (Intercept) | -0.48 | -0.51 | -0.22 | [-2.03, 0.89] | 78.00% | 0.73 | 0.997 | 138
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## child | 1.85 | 1.86 | 1.81 | [ 1.19, 2.54] | 100% | 1.00 | 0.996 | 303
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## camper | -0.88 | -0.86 | -0.99 | [-1.61, -0.07] | 98.40% | 0.96 | 0.996 | 292
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##
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## # Random effects (conditional) Intercept: persons
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## # Random effects (conditional) (SD/Cor: persons)
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##
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## Parameter | Median | Mean | MAP | 95% CI | pd | ps | Rhat | ESS
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## ---------------------------------------------------------------------------------------
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## persons.1 | -0.99 | -1.01 | -0.84 | [-2.68, 0.80] | 92.00% | 0.90 | 1.007 | 106.00
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## persons.2 | -4.65e-03 | -0.04 | 0.03 | [-1.63, 1.66] | 50.00% | 0.45 | 1.013 | 109.00
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## persons.3 | 0.69 | 0.66 | 0.69 | [-0.95, 2.34] | 79.60% | 0.78 | 1.010 | 114.00
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## persons.4 | 1.57 | 1.56 | 1.56 | [-0.05, 3.29] | 96.80% | 0.96 | 1.009 | 114.00
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## Parameter | Median | Mean | MAP | 95% CI | pd | ps | Rhat | ESS
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## -------------------------------------------------------------------------------
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## (Intercept) | 1.42 | 1.58 | 1.07 | [ 0.71, 3.58] | 100% | 1.00 | 1.010 | 126
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##
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## # Random effects (zero-inflated) Intercept: persons
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## # Random effects (zero-inflated) (SD/Cor: persons)
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## Parameter | Median | Mean | MAP | 95% CI | pd | ps | Rhat | ESS
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## ------------------------------------------------------------------------------------
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## persons.1 | 1.10 | 1.11 | 1.08 | [-0.23, 2.72] | 94.80% | 0.93 | 0.997 | 166.00
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## persons.2 | 0.18 | 0.18 | 0.22 | [-0.94, 1.58] | 63.20% | 0.54 | 0.996 | 154.00
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## persons.3 | -0.30 | -0.31 | -0.54 | [-1.79, 1.02] | 64.00% | 0.59 | 0.997 | 154.00
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## persons.4 | -1.45 | -1.46 | -1.44 | [-2.90, -0.10] | 98.00% | 0.97 | 1.000 | 189.00
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##
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## # Random effects (conditional) SD/Cor: persons
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## Parameter | Median | Mean | MAP | 95% CI | pd | ps | Rhat | ESS
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## ----------------------------------------------------------------------------------
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## (Intercept) | 1.42 | 1.58 | 1.07 | [ 0.71, 3.58] | 100% | 1.00 | 1.010 | 126.00
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##
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## # Random effects (zero-inflated) SD/Cor: persons
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## Parameter | Median | Mean | MAP | 95% CI | pd | ps | Rhat | ESS
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## ----------------------------------------------------------------------------------
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## (Intercept) | 1.30 | 1.49 | 0.99 | [ 0.63, 3.41] | 100% | 1.00 | 0.996 | 129.00
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## Parameter | Median | Mean | MAP | 95% CI | pd | ps | Rhat | ESS
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## -------------------------------------------------------------------------------
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## (Intercept) | 1.30 | 1.49 | 0.99 | [ 0.63, 3.41] | 100% | 1.00 | 0.996 | 129
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*bayestestR* also includes [**many other
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features**](https://easystats.github.io/bayestestR/reference/index.html)
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rope(posterior, range = c(-0.1, 0.1))
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## # Proportion of samples inside the ROPE [-0.10, 0.10]:
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##
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## inside ROPE
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## Inside ROPE
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## -----------
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## 4.40 %
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```
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``` r
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density_at(rnorm(1000, 1, 1), 1)
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## [1] 0.4
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## [1] 0.37
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```
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## Code of Conduct

‎tests/testthat/test-describe_posterior.R‎

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test_that("describe_posterior: response column for marginaleffects", {
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skip_if_not(getRversion() >= "4.0", "Don't run with R < 4.0")
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skip_if_not_installed("marginaleffects")
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skip_if_not_installed("marginaleffects", minimum_version = "0.29.0")
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skip_if_not_installed("curl")
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skip_if_offline()
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skip_if_not_installed("httr2")

‎tests/testthat/test-marginaleffects.R‎

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skip_on_cran()
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skip_if_not_installed("withr")
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skip_if_not_installed("rstanarm")
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skip_if_not_installed("marginaleffects", minimum_version = "0.24.1")
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skip_if_not_installed("marginaleffects", minimum_version = "0.29.0")
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skip_if_not_installed("collapse")
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withr::with_environment(

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