Commit 61dc458
Worms taxonomy integration (#104)
* Mod: WoRMS Taxonomy
* Minimal worms (#103)
* dev:minimal WoRMS compatibility: handle remote deletion
* dev:minimal WoRMS compatibility: mypy fix
* dev:ETS sync, fine tuning
* Mod: WoRMS Taxonomy - remove WoRMS table
* dev(WoRMS): taxo DB table upgrade
* dev(WoRMS): mypy fix
* dev(WoRMS): add info for deprecated taxon & lineage
* dev(WoRMS): adjust some endpoints interface due to split "WoRMS or not"
* dev(WoRMS): fix an endpoint returning nothing valid
* dev(WoRMS): mypy
* dev(WoRMS): API, we cannot have these fields accurately
* dev(WoRMS): WoRMS export
* dev(WoRMS): Generate missing kingdom
* dev(WoRMS): forgotten deletions
* dev(WoRMS): bugfix with work-ish UTs
* dev(WoRMS): bugfix with work-ish UTs
* test(WoRMS): align all UTs but DwCA ones (kept for phase 2)
* test(WoRMS): missed case in DwCA export
* test(WoRMS): green DwCA export UTs
* test(WoRMS): green DwCA export UTs, forgotten file
* test(WoRMS): green DwCA export UTs, missing fix
* Upd: version 3.0
* Upd: version 3.0.0
* Mod: Do not classify in deprecated categories
* Mod: added get method
* Mod: typing for test
* dev(WoRMS): prevent move on deprecated, case of validation was missed
* dev(WoRMS): prevent move on deprecated, case of validation was missed - pass 2
* dev(WoRMS): prevent move on deprecated, case of validation was missed - pass 3
* dev(WoRMS): prevent move on deprecated, but not for "fix deprecated"
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Co-authored-by: bea777515 <beatrice.caraveo@imev-mer.fr>1 parent 1c53911 commit 61dc458
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- data
- import_test_plus/m106_mn01_n1_sml
- import_test_tot_vol_bad_update/m106_mn01_n1_sml
- import_test_tot_vol_update/m106_mn01_n1_sml
- import_test_tot_vol/m106_mn01_n1_sml
- import_test_upd_empty/m106_mn01_n1_sml
- import_test/m106_mn01_n1_sml
- import_update/m106_mn01_n1_sml
- import_various_states/import_vs_sample1
- merge_test/more_cols
- ref_exports
- abundances_by_sample_filtered_on_cat
- abundances_by_sample_filtered_on_sample
- abundances_by_sample
- abundances_by_subsample_mapped
- abundances_by_subsample
- abundances_whole_project
- bak_all_images/m106_mn01_n1_sml
- bak_no_image/m106_mn01_n1_sml
- biovolumes_by_sample
- biovolumes_by_subsample
- concentrations_by_sample
- concentrations
- doi
- images/other_Biota
- summary_per_sample
- summary_per_subsample
- summary_whole
- tsv_all_entities_no_img_no_ids
- tsv_by_acquisition
- tsv_by_taxon
- other_Biota
- tsv_with_ids
- pg_files
- tests
- docker
- py
- API_models
- API_operations
- CRUD
- exports
- BO
- DB
- cmds/db_upg/versions
- data
- helpers
- providers
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