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<!doctype html>
<html lang="en">
<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1" />
<title>VCF-RDFizer Term Pages</title>
<style>
:root {
--bg: #f3efe8;
--panel: #ffffff;
--ink: #1b2229;
--muted: #5c6a78;
--accent: #0f6772;
--border: #d5e1eb;
}
* { box-sizing: border-box; }
body { margin: 0; font-family: "IBM Plex Sans", "Segoe UI", sans-serif; color: var(--ink); background: var(--bg); }
.container { width: min(1220px, 94vw); margin: 0 auto; padding: 30px 0 56px; display: grid; gap: 16px; }
.panel { background: var(--panel); border: 1px solid var(--border); border-radius: 14px; padding: 22px; }
.panel > * + * { margin-top: 12px; }
h1 { margin: 0; font-size: 2rem; }
p { margin: 0; color: var(--muted); line-height: 1.55; }
.actions { margin-top: 12px; display: flex; flex-wrap: wrap; gap: 10px; }
.btn { display: inline-flex; align-items: center; justify-content: center; padding: 8px 12px; border: 1px solid var(--border); border-radius: 10px; text-decoration: none; color: var(--accent); background: #fff; font-weight: 600; font-size: 0.9rem; }
.table-wrap { overflow: auto; border: 1px solid var(--border); border-radius: 12px; margin-top: 0; background: #fff; }
table { width: 100%; border-collapse: collapse; min-width: 880px; background: #fff; }
th, td { border-bottom: 1px solid var(--border); padding: 10px 12px; font-size: 0.9rem; text-align: left; vertical-align: top; line-height: 1.45; }
thead th { background: linear-gradient(180deg, #f1f7fa 0%, #e7f0f5 100%); color: #21485d; font-size: 0.84rem; letter-spacing: 0.01em; }
tbody tr:nth-child(even) td { background: #fbfdff; }
tbody tr:hover td { background: #f4f9fc; }
.cell-type, .cell-source { white-space: nowrap; color: #325064; }
.cell-summary { min-width: 360px; color: #3f5668; }
code { font-family: "IBM Plex Mono", "SFMono-Regular", monospace; background: #eff6f8; border-radius: 6px; padding: 2px 6px; color: #174950; font-size: 0.88rem; }
</style>
</head>
<body>
<div class="container">
<div class="panel">
<h1>VCF-RDFizer Term Pages</h1>
<p>HTML documentation pages for every <code>vcfr:</code> term referenced in this repository (ontology, SHACL, examples, and docs).</p>
<div class="actions">
<a class="btn" href="../index.html">Back to Home</a>
<a class="btn" href="../ontology-reference.html">Open Vocabulary Reference</a>
<a class="btn" href="../assets/vcf-rdfizer-vocabulary.ttl" target="_blank" rel="noreferrer">Open Ontology TTL</a>
<a class="btn" href="../assets/vcf-rdfizer-vocabulary.shacl.ttl" target="_blank" rel="noreferrer">Open SHACL TTL</a>
</div>
</div>
<div class="panel">
<div class="table-wrap">
<table>
<thead><tr><th>Term</th><th>Type</th><th>Sources</th><th>Summary</th></tr></thead>
<tbody>
<tr>
<td class="cell-term"><a href="alt.html"><code>vcfr:alt</code></a></td>
<td class="cell-type">Datatype Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">ALT allele string; for multiple ALT alleles you may repeat this property or use rdf:List externally.</td>
</tr>
<tr>
<td class="cell-term"><a href="AltDefinition.html"><code>vcfr:AltDefinition</code></a></td>
<td class="cell-type">Class</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="ALTHeaderLine.html"><code>vcfr:ALTHeaderLine</code></a></td>
<td class="cell-type">Class</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">Represents ##ALT=<ID=...,Description=...> used for symbolic alternate alleles.</td>
</tr>
<tr>
<td class="cell-term"><a href="altId.html"><code>vcfr:altId</code></a></td>
<td class="cell-type">Datatype Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="asSequenceAlteration.html"><code>vcfr:asSequenceAlteration</code></a></td>
<td class="cell-type">Object Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">Links a VCF record/call to a sequence alteration representation (e.g., SB/gvar SequenceAlteration: so:0001059).</td>
</tr>
<tr>
<td class="cell-term"><a href="CharacterType.html"><code>vcfr:CharacterType</code></a></td>
<td class="cell-type">Class</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="chrom.html"><code>vcfr:chrom</code></a></td>
<td class="cell-type">Datatype Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="chromosome.html"><code>vcfr:chromosome</code></a></td>
<td class="cell-type">Object Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">Reference sequence for CHROM, preferably resolvable (e.g., INSDC/RefSeq/Ensembl). Can align to FALDO reference.</td>
</tr>
<tr>
<td class="cell-term"><a href="contigAssembly.html"><code>vcfr:contigAssembly</code></a></td>
<td class="cell-type">Datatype Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="contigCount.html"><code>vcfr:contigCount</code></a></td>
<td class="cell-type">Datatype Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="ContigHeaderLine.html"><code>vcfr:ContigHeaderLine</code></a></td>
<td class="cell-type">Class</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">Represents ##contig=<ID=...,length=...,assembly=...,...> entries.</td>
</tr>
<tr>
<td class="cell-term"><a href="contigId.html"><code>vcfr:contigId</code></a></td>
<td class="cell-type">Datatype Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="contigLength.html"><code>vcfr:contigLength</code></a></td>
<td class="cell-type">Datatype Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="contigMd5.html"><code>vcfr:contigMd5</code></a></td>
<td class="cell-type">Datatype Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="declaredBy.html"><code>vcfr:declaredBy</code></a></td>
<td class="cell-type">Object Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">Links an INFO/FORMAT/FILTER/ALT value/usage to its header definition line.</td>
</tr>
<tr>
<td class="cell-term"><a href="FieldDefinition.html"><code>vcfr:FieldDefinition</code></a></td>
<td class="cell-type">Class</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">Common superclass for INFO/FORMAT/FILTER/ALT header definitions.</td>
</tr>
<tr>
<td class="cell-term"><a href="fieldDescription.html"><code>vcfr:fieldDescription</code></a></td>
<td class="cell-type">Datatype Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="fieldId.html"><code>vcfr:fieldId</code></a></td>
<td class="cell-type">Datatype Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="fieldNumber.html"><code>vcfr:fieldNumber</code></a></td>
<td class="cell-type">Datatype Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">The VCF Number value as string (e.g., 0, 1, A, R, G, .).</td>
</tr>
<tr>
<td class="cell-term"><a href="fieldType.html"><code>vcfr:fieldType</code></a></td>
<td class="cell-type">Object Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="fieldValue.html"><code>vcfr:fieldValue</code></a></td>
<td class="cell-type">Datatype Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">Literal string value; for typed values prefer vcfr:fieldValueInteger/Decimal/Boolean when possible. For source token '.', use literal '.'^^vcfr:Null.</td>
</tr>
<tr>
<td class="cell-term"><a href="fieldValueBoolean.html"><code>vcfr:fieldValueBoolean</code></a></td>
<td class="cell-type">Datatype Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="fieldValueDecimal.html"><code>vcfr:fieldValueDecimal</code></a></td>
<td class="cell-type">Datatype Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="fieldValueInteger.html"><code>vcfr:fieldValueInteger</code></a></td>
<td class="cell-type">Datatype Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="fileDate.html"><code>vcfr:fileDate</code></a></td>
<td class="cell-type">Datatype Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="FileDateHeaderLine.html"><code>vcfr:FileDateHeaderLine</code></a></td>
<td class="cell-type">Class</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="fileFormat.html"><code>vcfr:fileFormat</code></a></td>
<td class="cell-type">Datatype Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="FileFormatHeaderLine.html"><code>vcfr:FileFormatHeaderLine</code></a></td>
<td class="cell-type">Class</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="filter.html"><code>vcfr:filter</code></a></td>
<td class="cell-type">Datatype Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">FILTER column value (e.g., PASS or semicolon-separated list). For source token '.', use literal '.'^^vcfr:Null.</td>
</tr>
<tr>
<td class="cell-term"><a href="FilterDefinition.html"><code>vcfr:FilterDefinition</code></a></td>
<td class="cell-type">Class</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="FILTERHeaderLine.html"><code>vcfr:FILTERHeaderLine</code></a></td>
<td class="cell-type">Class</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">Represents ##FILTER=<ID=...,Description=...>.</td>
</tr>
<tr>
<td class="cell-term"><a href="filterId.html"><code>vcfr:filterId</code></a></td>
<td class="cell-type">Datatype Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="FlagType.html"><code>vcfr:FlagType</code></a></td>
<td class="cell-type">Class</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="FloatType.html"><code>vcfr:FloatType</code></a></td>
<td class="cell-type">Class</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="FormatFieldDefinition.html"><code>vcfr:FormatFieldDefinition</code></a></td>
<td class="cell-type">Class</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="FormatFieldDefinitionShape.html"><code>vcfr:FormatFieldDefinitionShape</code></a></td>
<td class="cell-type">Referenced Term</td>
<td class="cell-source">repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="FormatFieldValue.html"><code>vcfr:FormatFieldValue</code></a></td>
<td class="cell-type">Class</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">A structured key/value for one FORMAT attribute within a sample call.</td>
</tr>
<tr>
<td class="cell-term"><a href="FormatFieldValueShape.html"><code>vcfr:FormatFieldValueShape</code></a></td>
<td class="cell-type">Referenced Term</td>
<td class="cell-source">repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="FORMATHeaderLine.html"><code>vcfr:FORMATHeaderLine</code></a></td>
<td class="cell-type">Class</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">Represents ##FORMAT=<ID=...,Number=...,Type=...,Description=...>.</td>
</tr>
<tr>
<td class="cell-term"><a href="formatRaw.html"><code>vcfr:formatRaw</code></a></td>
<td class="cell-type">Datatype Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">Raw FORMAT string as in VCF (optional). Use structured vcfr:FormatFieldValue in SampleCall.</td>
</tr>
<tr>
<td class="cell-term"><a href="hasCall.html"><code>vcfr:hasCall</code></a></td>
<td class="cell-type">Object Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="hasFormatValue.html"><code>vcfr:hasFormatValue</code></a></td>
<td class="cell-type">Object Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="hasHeader.html"><code>vcfr:hasHeader</code></a></td>
<td class="cell-type">Object Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="hasHeaderLine.html"><code>vcfr:hasHeaderLine</code></a></td>
<td class="cell-type">Object Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="hasInfoValue.html"><code>vcfr:hasInfoValue</code></a></td>
<td class="cell-type">Object Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="hasRecord.html"><code>vcfr:hasRecord</code></a></td>
<td class="cell-type">Object Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="hasSampleCall.html"><code>vcfr:hasSampleCall</code></a></td>
<td class="cell-type">Object Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="headerKey.html"><code>vcfr:headerKey</code></a></td>
<td class="cell-type">Datatype Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="HeaderLine.html"><code>vcfr:HeaderLine</code></a></td>
<td class="cell-type">Class</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">A structured representation of one VCF header line (e.g., ##fileformat, ##INFO=<...>).</td>
</tr>
<tr>
<td class="cell-term"><a href="headerValue.html"><code>vcfr:headerValue</code></a></td>
<td class="cell-type">Datatype Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="InfoFieldDefinition.html"><code>vcfr:InfoFieldDefinition</code></a></td>
<td class="cell-type">Class</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="InfoFieldDefinitionShape.html"><code>vcfr:InfoFieldDefinitionShape</code></a></td>
<td class="cell-type">Referenced Term</td>
<td class="cell-source">repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="InfoFieldValue.html"><code>vcfr:InfoFieldValue</code></a></td>
<td class="cell-type">Class</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">A structured key/value for one INFO attribute within a record/call.</td>
</tr>
<tr>
<td class="cell-term"><a href="InfoFieldValueShape.html"><code>vcfr:InfoFieldValueShape</code></a></td>
<td class="cell-type">Referenced Term</td>
<td class="cell-source">repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="INFOHeaderLine.html"><code>vcfr:INFOHeaderLine</code></a></td>
<td class="cell-type">Class</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">Represents ##INFO=<ID=...,Number=...,Type=...,Description=...>.</td>
</tr>
<tr>
<td class="cell-term"><a href="infoRaw.html"><code>vcfr:infoRaw</code></a></td>
<td class="cell-type">Datatype Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">Raw INFO string as in VCF (optional). Use structured vcfr:InfoFieldValue for machine-use. For source token '.', use literal '.'^^vcfr:Null.</td>
</tr>
<tr>
<td class="cell-term"><a href="IntegerType.html"><code>vcfr:IntegerType</code></a></td>
<td class="cell-type">Class</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="iriTemplate.html"><code>vcfr:iriTemplate</code></a></td>
<td class="cell-type">Annotation Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">Recommended IRI minting template (RFC6570-style placeholders) for resources in this model.</td>
</tr>
<tr>
<td class="cell-term"><a href="missingValuePolicy.html"><code>vcfr:missingValuePolicy</code></a></td>
<td class="cell-type">Annotation Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">Defines how VCF missing token '.' should be represented in RDF.</td>
</tr>
<tr>
<td class="cell-term"><a href="Null.html"><code>vcfr:Null</code></a></td>
<td class="cell-type">Referenced Term</td>
<td class="cell-source">repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="pos.html"><code>vcfr:pos</code></a></td>
<td class="cell-type">Datatype Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="qual.html"><code>vcfr:qual</code></a></td>
<td class="cell-type">Datatype Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">QUAL column value. For source token '.', use literal '.'^^vcfr:Null.</td>
</tr>
<tr>
<td class="cell-term"><a href="recommendedSequenceAlterationClass.html"><code>vcfr:recommendedSequenceAlterationClass</code></a></td>
<td class="cell-type">Annotation Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="recordId.html"><code>vcfr:recordId</code></a></td>
<td class="cell-type">Datatype Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">VCF ID column (e.g., rsID). For source token '.', use literal '.'^^vcfr:Null.</td>
</tr>
<tr>
<td class="cell-term"><a href="ref.html"><code>vcfr:ref</code></a></td>
<td class="cell-type">Datatype Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="referenceGenome.html"><code>vcfr:referenceGenome</code></a></td>
<td class="cell-type">Datatype Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="ReferenceHeaderLine.html"><code>vcfr:ReferenceHeaderLine</code></a></td>
<td class="cell-type">Class</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="SampleCall.html"><code>vcfr:SampleCall</code></a></td>
<td class="cell-type">Class</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">Per-sample values for a variant call (e.g., GT, DP, AD), as declared by FORMAT header lines.</td>
</tr>
<tr>
<td class="cell-term"><a href="SampleCallShape.html"><code>vcfr:SampleCallShape</code></a></td>
<td class="cell-type">Referenced Term</td>
<td class="cell-source">repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="sampleId.html"><code>vcfr:sampleId</code></a></td>
<td class="cell-type">Datatype Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="SourceHeaderLine.html"><code>vcfr:SourceHeaderLine</code></a></td>
<td class="cell-type">Class</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="sourceSoftware.html"><code>vcfr:sourceSoftware</code></a></td>
<td class="cell-type">Datatype Property</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="StringType.html"><code>vcfr:StringType</code></a></td>
<td class="cell-type">Class</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="VariantCall.html"><code>vcfr:VariantCall</code></a></td>
<td class="cell-type">Class</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">Call-level representation for a record: QUAL/FILTER/INFO, plus FORMAT and per-sample fields.</td>
</tr>
<tr>
<td class="cell-term"><a href="VariantCallShape.html"><code>vcfr:VariantCallShape</code></a></td>
<td class="cell-type">Referenced Term</td>
<td class="cell-source">repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="VCFFile.html"><code>vcfr:VCFFile</code></a></td>
<td class="cell-type">Class</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">A VCF file artifact (as a dataset distribution) that contains a header and a set of VCF records.</td>
</tr>
<tr>
<td class="cell-term"><a href="VCFFileShape.html"><code>vcfr:VCFFileShape</code></a></td>
<td class="cell-type">SHACL NodeShape</td>
<td class="cell-source">shacl, repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="VCFHeader.html"><code>vcfr:VCFHeader</code></a></td>
<td class="cell-type">Class</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">Container for the structured header lines of a VCF file.</td>
</tr>
<tr>
<td class="cell-term"><a href="VCFHeaderShape.html"><code>vcfr:VCFHeaderShape</code></a></td>
<td class="cell-type">Referenced Term</td>
<td class="cell-source">repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="VCFNumberArity.html"><code>vcfr:VCFNumberArity</code></a></td>
<td class="cell-type">Class</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">Represents INFO/FORMAT Number values (e.g., 0, 1, A, R, G, .).</td>
</tr>
<tr>
<td class="cell-term"><a href="VCFRecord.html"><code>vcfr:VCFRecord</code></a></td>
<td class="cell-type">Class</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">A row in a VCF (CHROM, POS, ID, REF, ALT, QUAL, FILTER, INFO, FORMAT, samples...). This is a VCF-centric view; link to a sequence alteration representation via vcfr:asSequenceAlteration.</td>
</tr>
<tr>
<td class="cell-term"><a href="VCFRecordShape.html"><code>vcfr:VCFRecordShape</code></a></td>
<td class="cell-type">Referenced Term</td>
<td class="cell-source">repo</td>
<td class="cell-summary">No ontology comment available.</td>
</tr>
<tr>
<td class="cell-term"><a href="VCFValueType.html"><code>vcfr:VCFValueType</code></a></td>
<td class="cell-type">Class</td>
<td class="cell-source">ontology, repo</td>
<td class="cell-summary">Enumerates VCF Type values used in INFO/FORMAT definitions: Integer, Float, Flag, Character, String.</td>
</tr>
</tbody>
</table>
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