Format with 2026 black style

Author: nsoranzo

edam_ontology/__init__.py

@@ -1,4 +1,4 @@
 """EDAM data packaged as a Python module."""
 
 # EDAMmajorversion.EDMAminorversion.pythonprojectdotversion
-__version__ = '1.25.3'
+__version__ = "1.25.3"

edam_ontology/streams.py

@@ -2,6 +2,7 @@
 
 Keep parsing and such to minimum to maintain maximum backward compatibility.
 """
+
 import importlib.resources
 from typing import IO
 

scripts/new_version.py

@@ -6,7 +6,6 @@
 import sys
 from distutils.version import StrictVersion
 
-
 PROJECT_DIRECTORY = os.path.join(os.path.dirname(__file__), "..")
 
 
@@ -35,25 +34,25 @@ def extend(from_str, line):
         from_str += "\n"
         return history.replace(from_str, from_str + line + "\n")
 
-    history = extend(".. to_doc", """
+    history = extend(
+        ".. to_doc",
+        """
 ---------------------
 %s.dev0
 ---------------------
 
-    """ % new_version)
+    """ % new_version,
+    )
     with open(history_path, "w") as fh:
         fh.write(history)
 
     source_mod_path = os.path.join(PROJECT_DIRECTORY, source_dir, "__init__.py")
     with open(source_mod_path) as fh:
         mod = fh.read()
-    mod = re.sub(r"__version__ = '[\d\.]+'",
-                 "__version__ = '%s.dev0'" % new_version,
-                 mod, 1)
+    mod = re.sub(r"__version__ = '[\d\.]+'", "__version__ = '%s.dev0'" % new_version, mod, 1)
     with open(source_mod_path, "w") as fh:
         mod = fh.write(mod)
-    shell(["git", "commit", "-m", "Starting work on %s" % new_version,
-           "HISTORY.rst", "%s/__init__.py" % source_dir])
+    shell(["git", "commit", "-m", "Starting work on %s" % new_version, "HISTORY.rst", "%s/__init__.py" % source_dir])
 
 
 def shell(cmds, **kwds):

tests/test_load.py

@@ -1,4 +1,5 @@
 """Test file loading of eda_data.streams package."""
+
 from edam_ontology.streams import tabular_stream
 
 
@@ -7,8 +8,8 @@ def test_tabular_stream():
     term_count = 0
     with tabular_stream() as handle:
         for line in handle.readlines():
-            fields = line.split('\t')
-            if not fields[0].startswith('http://edamontology.org/'):
+            fields = line.split("\t")
+            if not fields[0].startswith("http://edamontology.org/"):
                 continue
             term_count += 1
 

tox.ini

@@ -6,21 +6,23 @@ test_dir = tests
 [testenv]
 commands =
     lint: flake8 {[tox]source_dir} {[tox]test_dir}
-    unit: pytest {env:PYTEST_FAIL_FAIL:} {env:PYTEST_CAPTURE:} -m {env:PYTEST_MARK:""} {env:PYTEST_TARGET:{[tox]test_dir}} {posargs}
+    lint: black --check --diff .
     mypy: mypy --install-types --non-interactive {[tox]source_dir} {[tox]test_dir} {posargs}
+    unit: pytest {env:PYTEST_FAIL_FAIL:} {env:PYTEST_CAPTURE:} -m {env:PYTEST_MARK:""} {env:PYTEST_TARGET:{[tox]test_dir}} {posargs}
 
 passenv = 
     HOME
     DOCS
     GIT_*
 
 deps =
+    lint: black
     lint: flake8-import-order
     lint: flake8-docstrings
     lint: flake8
+    mypy: mypy
     unit: -rdev-requirements.txt
     unit: pytest 
-    mypy: mypy
 
 skip_install =
     lint,mypy: True