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edmundmilleredmundmiller
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feat(nvim): Add queries for nextflow
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‎config/nvim/queries/nextflow/folds.scm‎

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;; Nextflow treesitter fold queries
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;; Fold process blocks
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(process_declaration
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body: (block) @fold)
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;; Fold workflow blocks
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(workflow_declaration
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body: (block) @fold)
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;; Fold function blocks
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(function_declaration
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body: (block) @fold)
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;; Fold class and interface blocks
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(class_declaration
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body: (class_body) @fold)
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(interface_declaration
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body: (interface_body) @fold)
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;; Fold method blocks
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(method_declaration
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body: (block) @fold)
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;; Fold closure blocks
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(closure
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body: (block) @fold)
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;; Fold control flow blocks
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(if_statement
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then: (block) @fold)
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(if_statement
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else: (block) @fold)
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(while_statement
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body: (block) @fold)
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(for_statement
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body: (block) @fold)
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(try_statement
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body: (block) @fold)
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(catch_clause
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body: (block) @fold)
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(finally_clause
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body: (block) @fold)
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;; Fold multi-line comments
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(block_comment) @fold
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;; Fold multiline strings
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(multiline_string_literal) @fold
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;; Fold array and map literals
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(array_literal) @fold
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(map_literal) @fold
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;; Fold switch statements
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(switch_statement
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body: (switch_block) @fold)
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;; Fold case blocks
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(case_clause
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body: (block) @fold)

‎config/nvim/queries/nextflow/highlights.scm‎

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;; Nextflow treesitter highlight queries
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;; Based on the nextflow-io/tree-sitter-nextflow grammar
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;; Keywords
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[
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"process"
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"workflow"
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"function"
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"include"
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"from"
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"params"
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"nextflow"
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"manifest"
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"docker"
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"singularity"
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"conda"
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"env"
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"executor"
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"queue"
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"memory"
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"cpus"
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"time"
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"disk"
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"attempt"
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"tag"
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"publishDir"
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"cache"
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"container"
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"module"
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"conda"
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"spack"
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"beforeScript"
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"afterScript"
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"shell"
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"script"
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"exec"
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"stub"
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"when"
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"input"
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"output"
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"take"
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"emit"
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"main"
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] @keyword
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;; Operators
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[
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"="
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"+="
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"-="
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"*="
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"/="
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"%="
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"=="
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"!="
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"<"
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"<="
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">"
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">="
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"&&"
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"||"
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"!"
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"+"
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"-"
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"*"
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"/"
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"%"
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"~"
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"=~"
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"!~"
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"<<"
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">>"
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"&"
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"|"
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"^"
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"?"
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":"
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"?:"
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"?."
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"*."
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".&"
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".@"
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"*.@"
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"++"
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"--"
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"**"
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"<=>"
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"in"
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"as"
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"instanceof"
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] @operator
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;; Punctuation
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[
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"("
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")"
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"["
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"]"
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"{"
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"}"
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";"
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","
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"."
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"->"
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"=>"
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] @punctuation.delimiter
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;; Literals
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(boolean_literal) @boolean
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(null_literal) @constant.builtin
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(number_literal) @number
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(string_literal) @string
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(gstring_literal) @string
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(multiline_string_literal) @string
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;; Regular expressions
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(regex_literal) @string.regex
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;; Comments
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(line_comment) @comment
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(block_comment) @comment
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;; Identifiers
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(identifier) @variable
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;; Function calls
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(method_call
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object: (identifier) @variable
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method: (identifier) @function.method)
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(function_call
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function: (identifier) @function.call)
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;; Type annotations
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(type_annotation
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type: (identifier) @type)
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;; Channel operations
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(method_call
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object: (identifier) @variable (#match? @variable "^Channel$")
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method: (identifier) @function.builtin)
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;; Process directives
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(assignment
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left: (identifier) @keyword.directive
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(#match? @keyword.directive "^(cpus|memory|time|disk|queue|container|publishDir|tag|cache|executor|conda|module|beforeScript|afterScript|shell|script|exec|stub|when|input|output)$"))
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;; Variable definitions
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(assignment
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left: (identifier) @variable.definition)
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;; Parameters
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(params_declaration
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(identifier) @parameter)
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;; Include statements
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(include_statement
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module: (string_literal) @string.special)
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;; Process names
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(process_declaration
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name: (identifier) @function.definition)
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;; Workflow names
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(workflow_declaration
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name: (identifier) @function.definition)
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;; Function names
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(function_declaration
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name: (identifier) @function.definition)
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;; Groovy-style closures
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(closure) @function.definition
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;; Error handling
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(try_statement) @keyword
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(catch_clause) @keyword
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(finally_clause) @keyword
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(throw_statement) @keyword
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;; Control flow
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[
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"if"
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"else"
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"while"
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"for"
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"do"
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"switch"
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"case"
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"default"
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"break"
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"continue"
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"return"
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"try"
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"catch"
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"finally"
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"throw"
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] @keyword.control
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;; Built-in types
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[
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"int"
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"long"
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"float"
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"double"
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"boolean"
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"char"
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"byte"
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"short"
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"String"
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"def"
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"var"
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"void"
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] @type.builtin
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;; Access modifiers
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[
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"public"
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"private"
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"protected"
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"static"
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"final"
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"abstract"
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"synchronized"
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"volatile"
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"transient"
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"native"
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"strictfp"
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] @keyword.modifier
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;; Annotations
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(annotation
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name: (identifier) @attribute)
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;; Class and interface definitions
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(class_declaration
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name: (identifier) @type.definition)
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(interface_declaration
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name: (identifier) @type.definition)
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;; Import statements
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(import_statement) @keyword.import
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;; Package declarations
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(package_declaration) @keyword.import
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;; Special Nextflow variables
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((identifier) @constant.builtin
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(#match? @constant.builtin "^(params|workflow|nextflow|launchDir|workDir|projectDir|baseDir)$"))
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;; File paths and globs
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(string_literal) @string.special
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(#match? @string.special "\\*\\*?|\\?|\\[.*\\]")
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;; Environment variables
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(gstring_literal
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(gstring_expression
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(identifier) @variable.builtin
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(#match? @variable.builtin "^[A-Z_][A-Z0-9_]*$")))
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;; Special method calls
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(method_call
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method: (identifier) @function.builtin
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(#match? @function.builtin "^(collect|map|filter|flatten|unique|groupTuple|combine|join|mix|merge|splitText|splitCsv|splitFasta|view|subscribe|into|set)$"))
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;; Error highlighting for common mistakes
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(ERROR) @error

‎config/nvim/queries/nextflow/indents.scm‎

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;; Nextflow treesitter indent queries
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[
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(process_declaration)
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(workflow_declaration)
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(function_declaration)
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(class_declaration)
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(interface_declaration)
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(method_declaration)
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(closure)
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(block)
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(class_body)
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(interface_body)
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(switch_block)
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(if_statement)
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(while_statement)
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(for_statement)
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(try_statement)
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(catch_clause)
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(finally_clause)
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(case_clause)
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(array_literal)
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(map_literal)
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(argument_list)
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(parameter_list)
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] @indent.begin
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[
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"}"
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"]"
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")"
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] @indent.end
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[
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(line_comment)
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(block_comment)
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] @indent.ignore

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