SOMA/.gitignore at master · edualvarado/SOMA · GitHub

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# =============================================================
#  SOMA pipeline — repository contains SOURCE CODE only.
#  Bulk data, model checkpoints, Blender scenes, generated
#  meshes/figures, and third-party cloned repos are excluded.
# =============================================================

# ---- Third-party cloned repos (not part of this project) ----
00-Cloned/

# ---- Excluded stages / scratch ----
07-Rebuttal/
README_example.md

# ---- Bulk generated data dirs ----
02-Canonical-Model/S1/
02-Canonical-Model/S2/
02-Canonical-Model/S3/
02-Canonical-Model/S4/
02-Canonical-Model/S5/
04-Blender/data/
05-Training/checkpoints/

# ---- Archived code / logs / caches ----
**/99-Archived/
**/__pycache__/
*.pyc
*.pyo
slurm_*.out
*.out

# ---- Model weights ----
*.pth
*.ckpt
*.pt
*.npz
*.npy
*.pkl

# ---- 3D assets / Blender / meshes ----
*.blend
*.blend1
*.ply
*.obj
*.stl
*.fbx
*.gltf
*.glb
*.bvh

# ---- Images / documents / spreadsheets / archives ----
*.png
*.jpg
*.jpeg
*.gif
*.tif
*.tiff
*.pdf
*.mp4
*.mov
*.xls
*.xlsx
*.gz
*.zip
*.tar

# ---- Specific large data JSON (per-subject coverage dumps) ----
07-Rebuttal/marker_coverage/coverage_*.json

# ---- Project-page assets (committed intentionally) ----
!docs/
!docs/**
docs/index.html

# ---- Internal / not for publication ----
CLAUDE.md
Residuals-Python/RESUME.md
Residuals-Python/FINDINGS.md
*.bak
*.preSKIM_bak

# ---- OS / editor noise ----
.DS_Store
.idea/
.vscode/
*.swp