capitalization

Author: egeulgen

NEWS.md

@@ -2,12 +2,12 @@
 
 ## Major Changes
 
-- updated the MTL model after fixing the issue below
-- fixed issue in `MCR_table`. The coordinates were converted to hg19 (from hg18)
+- Updated the MTL model after fixing the issue below
+- Fixed issue in `MCR_table`. The coordinates were converted to hg19 (from hg18)
 
 ## Minor changes and bug fixes
 
-- made use of `caret::predict.train` explicit
+- Made use of `caret::predict.train` explicit
 - Removed 'Homo.sapiens' from Imports field (not used)
 
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@@ -16,16 +16,16 @@
 
 ## Major Changes
 
-- fixed an issue in `create_SCNA_score_df()` where the SCNA score was not calculated because the column name for "MCR_overlap_percent" was incorrectly assigned as "transcript_overlap_percent"
-- updated the MTL classification model `TCGA_MTL_fit` and `specific_thresholds` after fixing the issue above
+- Fixed an issue in `create_SCNA_score_df()` where the SCNA score was not calculated because the column name for "MCR_overlap_percent" was incorrectly assigned as "transcript_overlap_percent"
+- Updated the MTL classification model `TCGA_MTL_fit` and `specific_thresholds` after fixing the issue above
 
 ## Minor changes and bug fixes
 
 - Updated citation information, correcting author name
 - Minor changes in utility functions
-- added the `na.string` argument to `create_noncoding_impact_score_df()`, `predict_coding_impact()` and `create_features_df()` as the string that was used to indicate when a score is not available during annotation with ANNOVAR (default = ".")
-- generalized `determine_hotspot_genes()` to able to use occurrence annotations from different versions of COSMIC 
-- updated all data
+- Added the `na.string` argument to `create_noncoding_impact_score_df()`, `predict_coding_impact()` and `create_features_df()` as the string that was used to indicate when a score is not available during annotation with ANNOVAR (default = ".")
+- Generalized `determine_hotspot_genes()` to able to use occurrence annotations from different versions of COSMIC 
+- Updated all data
 
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