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Release 1.0.5
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‎CITATION.cff‎

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@@ -5,8 +5,8 @@ authors:
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given-names: Egon
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orcid: https://orcid.org/0000-0001-7542-0286
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title: Bacting
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version: 1.0.4
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date-released: 2025-01-19
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version: 1.0.5
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date-released: 2025-03-30
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doi: 10.5281/zenodo.2638709
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url: "https://github.com/egonw/bacting"
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preferred-citation:

‎README.md‎

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@@ -47,15 +47,15 @@ If these requirements are fulfilled then the following commands to the job:
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```shell
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export MAVEN_OPTS="--add-opens=java.base/java.util=ALL-UNNAMED --add-opens=java.base/java.lang.reflect=ALL-UNNAMED --add-opens=java.base/java.text=ALL-UNNAMED --add-opens=java.desktop/java.awt.font=ALL-UNNAMED"
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mvn versions:set -DnewVersion=1.0.4
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mvn versions:set -DnewVersion=1.0.5
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git commit -m "New release" -a
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mvn deploy -P release
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```
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### Making snapshots
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```shell
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mvn versions:set -DnewVersion=1.0.5-SNAPSHOT
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mvn versions:set -DnewVersion=1.0.6-SNAPSHOT
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mvn deploy
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```
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string to a Bioclipse `IMolecule` data object:
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```groovy
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@Grab(group='io.github.egonw.bacting', module='managers-cdk', version='1.0.3')
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@Grab(group='io.github.egonw.bacting', module='managers-cdk', version='1.0.5')
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workspaceRoot = "."
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def cdk = new net.bioclipse.managers.CDKManager(workspaceRoot);
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```python
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from scyjava import config, jimport
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config.add_endpoints('io.github.egonw.bacting:managers-cdk:1.0.3')
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config.add_endpoints('io.github.egonw.bacting:managers-cdk:1.0.5')
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workspaceRoot = "."
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cdkClass = jimport("net.bioclipse.managers.CDKManager")

‎bacting-core/pom.xml‎

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<parent>
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<artifactId>bacting</artifactId>
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<groupId>io.github.egonw.bacting</groupId>
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<version>1.0.5-SNAPSHOT</version>
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<version>1.0.5</version>
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</parent>
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<artifactId>bacting-core</artifactId>

‎bundle/pom.xml‎

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<parent>
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<artifactId>bacting</artifactId>
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<groupId>io.github.egonw.bacting</groupId>
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<version>1.0.5-SNAPSHOT</version>
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<version>1.0.5</version>
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</parent>
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<artifactId>bacting-bundle</artifactId>
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<dependency>
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<groupId>io.github.egonw.bacting</groupId>
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<artifactId>bacting-core</artifactId>
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<version>1.0.5-SNAPSHOT</version>
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<version>1.0.5</version>
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</dependency>
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<dependency>
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<groupId>io.github.egonw.bacting</groupId>
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<artifactId>managers-ui</artifactId>
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<version>1.0.5-SNAPSHOT</version>
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<version>1.0.5</version>
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</dependency>
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<dependency>
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<groupId>io.github.egonw.bacting</groupId>
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<artifactId>managers-rdf</artifactId>
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<version>1.0.5-SNAPSHOT</version>
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<version>1.0.5</version>
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</dependency>
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<dependency>
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<groupId>io.github.egonw.bacting</groupId>
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<artifactId>managers-xml</artifactId>
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<version>1.0.5-SNAPSHOT</version>
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<version>1.0.5</version>
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</dependency>
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<dependency>
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<groupId>io.github.egonw.bacting</groupId>
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<artifactId>net.bioclipse.managers.wikidata</artifactId>
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<version>1.0.5-SNAPSHOT</version>
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<version>1.0.5</version>
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</dependency>
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<dependency>
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<groupId>io.github.egonw.bacting</groupId>
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<artifactId>managers-bridgedb</artifactId>
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<version>1.0.5-SNAPSHOT</version>
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<version>1.0.5</version>
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</dependency>
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<dependency>
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<groupId>io.github.egonw.bacting</groupId>
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<artifactId>managers-biojava</artifactId>
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<version>1.0.5-SNAPSHOT</version>
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<version>1.0.5</version>
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</dependency>
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<dependency>
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<groupId>io.github.egonw.bacting</groupId>
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<artifactId>managers-cdk</artifactId>
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<version>1.0.5-SNAPSHOT</version>
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<version>1.0.5</version>
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</dependency>
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<dependency>
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<groupId>io.github.egonw.bacting</groupId>
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<artifactId>managers-cdkdebug</artifactId>
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<version>1.0.5-SNAPSHOT</version>
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<version>1.0.5</version>
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</dependency>
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<dependency>
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<groupId>io.github.egonw.bacting</groupId>
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<artifactId>managers-chemspider</artifactId>
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<version>1.0.5-SNAPSHOT</version>
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<version>1.0.5</version>
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</dependency>
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<dependency>
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<groupId>io.github.egonw.bacting</groupId>
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<artifactId>managers-inchi</artifactId>
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<version>1.0.5-SNAPSHOT</version>
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<version>1.0.5</version>
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</dependency>
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<dependency>
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<groupId>io.github.egonw.bacting</groupId>
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<artifactId>managers-opsin</artifactId>
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<version>1.0.5-SNAPSHOT</version>
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<version>1.0.5</version>
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</dependency>
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<dependency>
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<groupId>io.github.egonw.bacting</groupId>
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<artifactId>managers-oscar</artifactId>
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<version>1.0.5-SNAPSHOT</version>
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<version>1.0.5</version>
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</dependency>
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<dependency>
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<groupId>io.github.egonw.bacting</groupId>
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<artifactId>managers-pubchem</artifactId>
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<version>1.0.5-SNAPSHOT</version>
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<version>1.0.5</version>
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</dependency>
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<dependency>
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<groupId>io.github.egonw.bacting</groupId>
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<artifactId>managers-excel</artifactId>
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<version>1.0.5-SNAPSHOT</version>
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<version>1.0.5</version>
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</dependency>
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</dependencies>
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‎managers-bioinfo/net.bioclipse.managers.biojava/pom.xml‎

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<parent>
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<artifactId>managers-bioinfo</artifactId>
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<groupId>io.github.egonw.bacting</groupId>
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<artifactId>managers-biojava</artifactId>
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<dependency>
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<groupId>io.github.egonw.bacting</groupId>
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<artifactId>bacting-core</artifactId>
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<version>1.0.5-SNAPSHOT</version>
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<version>1.0.5</version>
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</dependency>
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<dependency>
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<groupId>org.junit.jupiter</groupId>

‎managers-bioinfo/net.bioclipse.managers.bridgedb/pom.xml‎

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<artifactId>managers-bridgedb</artifactId>
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<dependency>
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<groupId>io.github.egonw.bacting</groupId>
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<artifactId>bacting-core</artifactId>
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<version>1.0.5-SNAPSHOT</version>
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<version>1.0.5</version>
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</dependency>
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<dependency>
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<groupId>org.bridgedb</groupId>
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<dependency>
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<artifactId>managers-ui</artifactId>
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<version>1.0.5-SNAPSHOT</version>
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<version>1.0.5</version>
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<scope>test</scope>
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</dependency>
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</dependencies>

‎managers-bioinfo/net.bioclipse.managers.libgpml/pom.xml‎

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<artifactId>managers-bioinfo</artifactId>
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<groupId>io.github.egonw.bacting</groupId>
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<artifactId>managers-libgpml</artifactId>
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<dependency>
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<groupId>io.github.egonw.bacting</groupId>
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<artifactId>bacting-core</artifactId>
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<version>1.0.5-SNAPSHOT</version>
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<version>1.0.5</version>
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</dependency>
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<dependency>
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<version>1.0.5</version>
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<dependency>
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<groupId>org.junit.jupiter</groupId>

‎managers-bioinfo/pom.xml‎

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<artifactId>bacting</artifactId>
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<artifactId>managers-bioinfo</artifactId>

‎managers-cheminfo/net.bioclipse.managers.cdk/pom.xml‎

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<artifactId>managers-cdk</artifactId>
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<artifactId>bacting-core</artifactId>
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<version>1.0.5</version>
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</dependency>
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<artifactId>managers-ui</artifactId>
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<version>1.0.5-SNAPSHOT</version>
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<version>1.0.5</version>
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<dependency>
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<groupId>xom</groupId>

‎managers-cheminfo/net.bioclipse.managers.cdkdebug/pom.xml‎

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<artifactId>managers-cheminfo</artifactId>
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<artifactId>managers-cdkdebug</artifactId>
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<artifactId>managers-cdk</artifactId>
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<version>1.0.5</version>
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</dependency>
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<dependency>
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<groupId>org.openscience.cdk</groupId>

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