Update deploy.yml

Author: AdlCruz

.github/workflows/deploy.yml

@@ -9,25 +9,30 @@ on:
 
 jobs:
   build-deploy:
+    if: "!contains(github.event.head_commit.message, '[skip ci]')"
     runs-on: ubuntu-latest
     steps:
       - name: Check out repository
         uses: actions/checkout@v4
 
-      # This action sets up R and caches packages based on your DESCRIPTION file
+      # THIS IS THE MISSING STEP: Installs R itself
+      - name: Set up R
+        uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: '4.5.0' # Or a specific version like '4.3.1'
+
+      # Now this step will work because Rscript is available
       - name: Set up R and cache dependencies
         uses: r-lib/actions/setup-r-dependencies@v2
         with:
-          packages: any::local # The 'any::local' tells it to look for the DESCRIPTION file
+          packages: any::local
 
-      # Your script to rebuild the RDS files in the 'tables' directory
       - name: Run data build script
         run: Rscript build_data_ehm_site.R
 
-      # The magic step: render and deploy the site
       - name: Render and Deploy
         uses: quarto-dev/quarto-actions/publish@v2
         with:
-          target: gh-pages # Deploys to the gh-pages branch
+          target: gh-pages
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}